1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tagtgtgctcgtcttcatagaatcatactactctgagttgcatcttgtgcagttccttctgttggtaatgagtattgactgctgccgcttgttatttcagACTTGCACCTTATCCGAAGATGTCTTTTCGGAGCATGGTTCGTGATATAAGGGAAAGTTTTGGGAATATATCGAGGCGGAACTTTGAGGTGAGAATTCAC
species | Zea mays |
transcript | GRMZM2G108228_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCTTCTTCGACGAGGCTTCGATCTGCTGCTCTCCGTCGGCGTGTTGGGG ACTTGCACCTTATCCGAAGATGTCTTTTCGGAGCATGGTTCGTGATATEST: gi|93015349|gb|EB640869.1|EB640869
genomic: ATCTTCTTCGACGAGGCTTCGATCTGCTGCTCTCCGTCGGCGTGTTGGGGgtaagcaagc ... gttatttcagACTTGCACCTTATCCGAAGATGTCTTTTCGGAGCATGGTTCGTGATAT
EST: ATCTTCTTCGACGAGGCTTCGATCTGCTGCTCTCCGTCGGCGTGTTGGGG ACTTGCACCTTATCCGAAGATGTCTTTTCGGAGCATTGGTTCGTGATATAAEST: gi|78111744|gb|DV530141.1|DV530141
genomic: ATCTTCTTCGACGAGGCTTCGATCTGCTGCTCTCCGTCGGCGTGTTGGGGgtaagcaagc ... gttatttcagACTTGCACCTTATCCGAAGATGTCTTTTCGGAGCAT-GGTTCGTGATATAA
EST: ATCTTCTTCGACGAGGCTTCGATCTGCTGCTCTCCGTCGGCGTGTTGGGG ACTTGCACCTTATCCGAAGATGTCTTTTCGGAGCATGGTTCGTGATATAAGEST: gi|211383375|gb|FL329680.1|FL329680
genomic: ATCTTCTTCGACGAGGCTTCGATCTGCTGCTCTCCGTCGGCGTGTTGGGGgtaagcaagc ... gttatttcagACTTGCACCTTATCCGAAGATGTCTTTTCGGAGCATGGTTCGTGATATAAG
EST: ATCTTCTTCGACGAGGCTTCGATCTGCTGCTCTCCGTCGGCGTGTTGGGG ACTTGCACCTTATCCGAAGATGTCTTTTCGGAGCATGGATCGTGATATAA
genomic: ATCTTCTTCGACGAGGCTTCGATCTGCTGCTCTCCGTCGGCGTGTTGGGGgtaagcaagc ... gttatttcagACTTGCACCTTATCCGAAGATGTCTTTTCGGAGCATGGTTCGTGATATAA
tgtgcagttccttctgttggtaatgagtattgactgctgccgcttgttatttcagACTTGCACCTTATCCGAAGATGTCTTTTCGGAGCATGGTTCGTGATATAAGGGAAAGTTTTGGGAATATATCGAGGCGGAACTTTGAGGTGAGAATTCAC
tattgac putative branch site (score: 286)
ttatttc putative PPT
ttgttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtgtgctcgtcttcatagaatcatactactctgagttgcatcttgtgcagttccttctgttggtaatgagtattgactgctgccgcttgttatttcagACTTGCACCTTATCCGAAGATGTCTTTTCGGAGCATGGTTCGTGATATAAGGGAAAGTTTTGGGAATATATCGAGGCGGAACTTTGAGGTGAGAATTCAC
- -tgtgctc
- - - - - - - - - - - - - - - - - - -ttgcatc
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