1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagaacctctccgttggtattgtgacttgcttagctacttttgagggggttgatttagttgatgcggttctgacttctgaagtggcggattggcccgtttcagGCTGCGAGGAAGTACACGGGGATGGTGGAGGACTGCTGCTGCGACTATGAGACGGTGGACGCCATCAACGAGGAGGTCCTGCATCCAATCCTACAGGAAC
species | Zea mays |
transcript | GRMZM2G108115_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCCGGGCGTCCCTTCCTCCCCCTCGTCACCTGGAAGCTGCGGCTGCCCT GCTGCGAGGAAGTACACGGGGATGGTGGAGGACTGCTGCTGCGACTATGAGEST: gi|211489776|gb|FL012897.1|FL012897
genomic: TCCCGGGCGTCCCTTCCTCCCCCTCGTCACCTGGAAGCTGCGGCTGCCCTgtaagaacct ... cccgtttcagGCTGCGAGGAAGTACACGGGGATGGTGGAGGACTGCTGCTGCGACTATGAG
EST: TCCCGGGCGTCCCTTCCTCCCCCTCGTCACCTGGAAGCTGCGGCTGCCCT GCTGCGAGGAAGTACACGGGGATGGTGGAGGACTGCTGCTGCGACTATGAGEST: gi|149060174|gb|EE157144.2|EE157144
genomic: TCCCGGGCGTCCCTTCCTCCCCCTCGTCACCTGGAAGCTGCGGCTGCCCTgtaagaacct ... cccgtttcagGCTGCGAGGAAGTACACGGGGATGGTGGAGGACTGCTGCTGCGACTATGAG
EST: TCCCGGGCGTCCCTTCCTCCCCCTCGTCACCTGGAAGCTGCGGCTGCCCT GCTGCGAGGAAGTACACGGGGATGGTGGAGGACTGCTGCTGCGACTATGAGEST: gi|32865873|gb|CF005555.1|CF005555
genomic: TCCCGGGCGTCCCTTCCTCCCCCTCGTCACCTGGAAGCTGCGGCTGCCCTgtaagaacct ... cccgtttcagGCTGCGAGGAAGTACACGGGGATGGTGGAGGACTGCTGCTGCGACTATGAG
EST: TCCCGGGCGTCCCTTCCTCCCCCTCGTCACCTGGAAGCTGCGGCTGCCCT GCTGCGAGGAAGTACACGGGGATGGTGGAGGACTGCTGCTGCGACTATGAGEST: gi|211489777|gb|FL012898.1|FL012898
genomic: TCCCGGGCGTCCCTTCCTCCCCCTCGTCACCTGGAAGCTGCGGCTGCCCTgtaagaacct ... cccgtttcagGCTGCGAGGAAGTACACGGGGATGGTGGAGGACTGCTGCTGCGACTATGAG
EST: TCCCGGGCGTCCCTTCCTCCCCCTCGTCACCTGGAAGCTGCGGCTGCCCT GCTGCGAGGAAGTACACGGGGATGGTGGAGGACTGCTGCTGCGACTATGAGEST: gi|211428363|gb|FL254707.1|FL254707
genomic: TCCCGGGCGTCCCTTCCTCCCCCTCGTCACCTGGAAGCTGCGGCTGCCCTgtaagaacct ... cccgtttcagGCTGCGAGGAAGTACACGGGGATGGTGGAGGACTGCTGCTGCGACTATGAG
EST: TCCCGGGCGTCCCTTCCTCCCCCTCGTCACCTGGAAGCTGCGGCTGCCCT GCTGCGAGGAAGTACACGGGGATGGTGGAGGACTGCTGCTGCGACTATGAGEST: gi|211489775|gb|FL012896.1|FL012896
genomic: TCCCGGGCGTCCCTTCCTCCCCCTCGTCACCTGGAAGCTGCGGCTGCCCTgtaagaacct ... cccgtttcagGCTGCGAGGAAGTACACGGGGATGGTGGAGGACTGCTGCTGCGACTATGAG
EST: TCCCGGGCGTCCCTTCCTCCCCCTCGTCACCTGGAAGCTGCGGCTGCCCT GCTGCGAGGAAGTACACGGGGATGGTGGAAGACTGCTGCTGCGACTATGAGEST: gi|211428362|gb|FL254706.1|FL254706
genomic: TCCCGGGCGTCCCTTCCTCCCCCTCGTCACCTGGAAGCTGCGGCTGCCCTgtaagaacct ... cccgtttcagGCTGCGAGGAAGTACACGGGGATGGTGGAGGACTGCTGCTGCGACTATGAG
EST: TCCCGGGCGTCCCTTCCTCCCCCTCGTCACCTGGAAGCTGCGGCTGCCCT GCTGCGAGGAAGTACACGGGGATGGTGGAGGACTGCTGCTGCGACTATGAGEST: gi|31363511|gb|CD447868.1|CD447868
genomic: TCCCGGGCGTCCCTTCCTCCCCCTCGTCACCTGGAAGCTGCGGCTGCCCTgtaagaacct ... cccgtttcagGCTGCGAGGAAGTACACGGGGATGGTGGAGGACTGCTGCTGCGACTATGAG
EST: TCCCGGGCGTCCCTTCCTCCCCCTCGTCACCTGGAAGCTGCGGCTGCCCT GCTGCGAGGAAGTACACGGGGATGGTGGAGGACTGCTGCTGCGACTATGAG
genomic: TCCCGGGCGTCCCTTCCTCCCCCTCGTCACCTGGAAGCTGCGGCTGCCCTgtaagaacct ... cccgtttcagGCTGCGAGGAAGTACACGGGGATGGTGGAGGACTGCTGCTGCGACTATGAG
gttgatttagttgatgcggttctgacttctgaagtggcggattggcccgtttcagGCTGCGAGGAAGTACACGGGGATGGTGGAGGACTGCTGCTGCGACTATGAGACGGTGGACGCCATCAACGAGGAGGTCCTGCATCCAATCCTACAGGAAC
ttctgac putative branch site (score: 61)
cccgtttc putative PPT
tttagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaacctctccgttggtattgtgacttgcttagctacttttgagggggttgatttagttgatgcggttctgacttctgaagtggcggattggcccgtttcagGCTGCGAGGAAGTACACGGGGATGGTGGAGGACTGCTGCTGCGACTATGAGACGGTGGACGCCATCAACGAGGAGGTCCTGCATCCAATCCTACAGGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG