1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...actagaattgggtcccatatgtatgaggtgaaagatgttcctttttagatcggtactgatttgattgtaacctttgccttttgtttctttacctacacagAGAGCTGTCCTTGAGCCAGCAATGCAAGGAAGGGACATGGTTGGCCGTGCCAAAACTGGGACTGGTAAAACTTTGGCATTTGGAATCCCCATAATGGATG
species | Zea mays |
transcript | GRMZM2G107984_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGTCGAAAGGCTCGCCAGCAAGGGCATCACCAAGCTGTTCCCCATCCAG AGAGCTGTCCTTGAGCCAGCAATGCAAGGAAGGGACATGGTTGGCCGTGCCEST: gi|211281261|gb|FL322092.1|FL322092
genomic: TCGTCGAAAGGCTCGCCAGCAAGGGCATCACCAAGCTGTTCCCCATCCAGgtaacgagaa ... acctacacagAGAGCTGTCCTTGAGCCAGCAATGCAAGGAAGGGACATGGTTGGCCGTGCC
EST: TCGTCGAAAGGCTCGCCAGCAAGGGCATCACCAAGCTGTTCCCCATCCAG AGAGCTGTCCTTGAGCCGGCAATGCAAGGAAGGGACATGGTTGGCCGTGCCEST: gi|149089755|gb|EE179029.2|EE179029
genomic: TCGTCGAAAGGCTCGCCAGCAAGGGCATCACCAAGCTGTTCCCCATCCAGgtaacgagaa ... acctacacagAGAGCTGTCCTTGAGCCAGCAATGCAAGGAAGGGACATGGTTGGCCGTGCC
EST: TCGTCGAAAGGCTCGCCAGCAAGGGCATCACCAAGCTGTTCCCCATCCAG AGAGCTGTCCTTGAGCCAGCAATGCAAGGAAGGGACATGGTTGGCCGTGCCEST: gi|211017399|gb|FL066295.1|FL066295
genomic: TCGTCGAAAGGCTCGCCAGCAAGGGCATCACCAAGCTGTTCCCCATCCAGgtaacgagaa ... acctacacagAGAGCTGTCCTTGAGCCAGCAATGCAAGGAAGGGACATGGTTGGCCGTGCC
EST: TCGTCGAAAGGCTCGCCAGCAAGGGCATCAACAAGCTGTTCCCCATCCAG AGAGCTGTCCTTGAGCCGGCAATGCAAGGAAGGGACATGGTTGGCCGTGCCEST: gi|14191124|gb|BG833354.1|BG833354
genomic: TCGTCGAAAGGCTCGCCAGCAAGGGCATCACCAAGCTGTTCCCCATCCAGgtaacgagaa ... acctacacagAGAGCTGTCCTTGAGCCAGCAATGCAAGGAAGGGACATGGTTGGCCGTGCC
EST: GCTGTTCCCCATCCAG AGAGCTGTCCTTGAGCCAGCAATGCAAGGCAAGGGACATGGTTGGCCGTGCEST: gi|211017398|gb|FL066294.1|FL066294
genomic: GCTGTTCCCCATCCAGgtaacgagaa ... acctacacagAGAGCTGTCCTTGAGCCAGCAATGCAAGG-AAGGGACATGGTTGGCCGTGC
EST: TCGTCGAAAGGCTCGCCAGCAAGGGCATCACCAAGCTGTTCCCCATCCAG AGAGCTGTCCTTGAGCCGGCAATGCAAGGAAGGGACATGGTTGGCCGTGCC
genomic: TCGTCGAAAGGCTCGCCAGCAAGGGCATCACCAAGCTGTTCCCCATCCAGgtaacgagaa ... acctacacagAGAGCTGTCCTTGAGCCAGCAATGCAAGGAAGGGACATGGTTGGCCGTGCC
tagatcggtactgatttgattgtaacctttgccttttgtttctttacctacacagAGAGCTGTCCTTGAGCCAGCAATGCAAGGAAGGGACATGGTTGGCCGTGCCAAAACTGGGACTGGTAAAACTTTGGCATTTGGAATCCCCATAATGGATG
ttgtaac putative branch site (score: 164)
cctttgccttttgttt CT-rich tract
atttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actagaattgggtcccatatgtatgaggtgaaagatgttcctttttagatcggtactgatttgattgtaacctttgccttttgtttctttacctacacagAGAGCTGTCCTTGAGCCAGCAATGCAAGGAAGGGACATGGTTGGCCGTGCCAAAACTGGGACTGGTAAAACTTTGGCATTTGGAATCCCCATAATGGATG
- - - - - - - - - atgtatg
- - - - - - - - - - - - - - - - - -tgttcct
- - - - - - - - - - - - - - - - - - - - - - - - - -ggtactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgattg