1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atgatctatatttctaccgggtaatgaatcctgttaaaaataaagtatactgcactaattcttatacaacgaacataatatctgcttttattaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAGGAACTACAACCTGGGAAGAACTTTAGGTATCGGTACATTTGGAAAAGTG
species | Zea mays |
transcript | GRMZM2G107867_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCGCGCAGGAAGGTTGACCTGTCGGGGGCCGGCGAGCCCGGTAAGTAAG AGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAGEST: gi|71329108|gb|DR801263.1|DR801263
genomic: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAGgtaaccacgc ... ttaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
EST: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCC---------G AGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAGEST: gi|148999574|gb|EE036551.2|EE036551
genomic: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAGgtaaccacgc ... ttaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
EST: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAG AGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAGEST: gi|211427351|gb|FL101764.1|FL101764
genomic: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAGgtaaccacgc ... ttaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
EST: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAG AGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAGEST: gi|211427355|gb|FL101768.1|FL101768
genomic: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAGgtaaccacgc ... ttaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
EST: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAG AGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAGEST: gi|89758870|gb|DY687889.1|DY687889
genomic: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAGgtaaccacgc ... ttaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
EST: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCC---------G AGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAGEST: gi|211427354|gb|FL101767.1|FL101767
genomic: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAGgtaaccacgc ... ttaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
EST: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAGCCCGGTAAGTAAG AGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAGEST: gi|211427350|gb|FL101763.1|FL101763
genomic: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAGgtaaccacgc ... ttaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
EST: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGACGAACCCGGTAAGTAAG AGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAGEST: gi|211427353|gb|FL101766.1|FL101766
genomic: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAGgtaaccacgc ... ttaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
EST: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAG AGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAGEST: gi|71447675|gb|DR828725.1|DR828725
genomic: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAGgtaaccacgc ... ttaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
EST: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCC---------G AGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAGEST: gi|211210979|gb|FL114021.1|FL114021
genomic: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAGgtaaccacgc ... ttaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
EST: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAG AGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAGEST: gi|211427352|gb|FL101765.1|FL101765
genomic: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAGgtaaccacgc ... ttaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
EST: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAG AGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAGEST: gi|211440534|gb|FL230371.1|FL230371
genomic: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAGgtaaccacgc ... ttaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
EST: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCC---------G AGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
genomic: CGCGCGCAGGAAGGTTGACCTGTCGAGGGCCGGCGAACCCGGTAAGTAAGgtaaccacgc ... ttaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAG
tatactgcactaattcttatacaacgaacataatatctgcttttattaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAGGAACTACAACCTGGGAAGAACTTTAGGTATCGGTACATTTGGAAAAGTG
tattaat putative branch site (score: 2)
cttttatt CT-rich tract
ataatatctgctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgatctatatttctaccgggtaatgaatcctgttaaaaataaagtatactgcactaattcttatacaacgaacataatatctgcttttattaatggcagAGTGAAAATGGATGGAAGTAGTAAAGGGAGTGGGCATTCTGAAGCATTAAGGAACTACAACCTGGGAAGAACTTTAGGTATCGGTACATTTGGAAAAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC