Sequence
atgc intronic sequence ATGC exonic sequencegttgttgtctcggggggaattctttagcccctcttcctcttcttcttctttccttccgcatgtctttggactcgctgctgttcttttgcttggtacccttggatctctgactccagcccgttccccgaaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGAGAGAGCAGGAGGAGGCGGAGACATGGGTAGCTTCGCTAAGCTGGCGAGG
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211538417|gb|FL360289.1|FL360289EST: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG TTCTTGCTTCTTCC
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCC
EST:
gi|211171826|gb|FL323734.1|FL323734EST: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAG TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
EST:
gi|91877308|gb|EB407265.1|EB407265EST: GAGGAGGAGGAGTTGGTGAGCGAACTCCGGATCCGTGGGTGACCGCAGAG TTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCCGCCTGCAGGGGCCGGA
genomic: GAGGAGGAGGAGTTGGTGAGCGAACTCGGGATCAGTGGGTGACCGCAGAGgttgttgtct ... aaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttttgcttggtacccttggatctctgactccagcccgttccccgaaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGAGAGAGCAGGAGGAGGCGGAGACATGGGTAGCTTCGCTAAGCTGGCGAGG
ctctgac putative branch site (score: 3)
tttcc putative PPT
aaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgttgtctcggggggaattctttagcccctcttcctcttcttcttctttccttccgcatgtctttggactcgctgctgttcttttgcttggtacccttggatctctgactccagcccgttccccgaaatttccagTTCTTGCTTCTTCCTCTTGGAGGAGGAGGGCTGCAGCCTGCAGGGGCCGGAGAGAGCAGGAGGAGGCGGAGACATGGGTAGCTTCGCTAAGCTGGCGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG