1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaggggtggtggtctttgctctttgtgttctgtcccccacttcactgctgctgctgtttctttttcagctttgggcactgaaggttggcttacttgacagGAAATTCCCCGTTTAATTGCATATTGGACATGTCTTGTGGCGTTTGATTGGAGAATTTAATTCTTCCCAACGATTTCCGTTCTTCGGAGGCTTCCATCTT
species | Zea mays |
transcript | GRMZM2G107629_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGAGACCGGAGACGACCGCGCCCCGCGGTGGCGCTGCGACCCGCGATACG GAAATTCCCCGTTTAATTGCATATTGGACATGTCTTGTGGCGTTTGATTGGEST: gi|211330523|gb|FL189619.1|FL189619
genomic: TGAGACCGGAGACGACCGCGCCCCGCGGTGGCGCTGCGACCCGCGATACGgtgcattgct ... tacttgacagGAAATTCCCCGTTTAATTGCATATTGGACATGTCTTGTGGCGTTTGATTGG
EST: TGAGACCGGAGACGACCGCGCCCCGCGGTGGCGCTGCGACCCGCGATACG GAAATTCCCCGTTTAATTGCATATTGGACATGTCTTGTGGCGTTTGATTGG
genomic: TGAGACCGGAGACGACCGCGCCCCGCGGTGGCGCTGCGACCCGCGATACGgtgcattgct ... tacttgacagGAAATTCCCCGTTTAATTGCATATTGGACATGTCTTGTGGCGTTTGATTGG
tgctgctgctgtttctttttcagctttgggcactgaaggttggcttacttgacagGAAATTCCCCGTTTAATTGCATATTGGACATGTCTTGTGGCGTTTGATTGGAGAATTTAATTCTTCCCAACGATTTCCGTTCTTCGGAGGCTTCCATCTT
ggcttac putative branch site (score: 115)
cttactt CT-rich tract
tttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaggggtggtggtctttgctctttgtgttctgtcccccacttcactgctgctgctgtttctttttcagctttgggcactgaaggttggcttacttgacagGAAATTCCCCGTTTAATTGCATATTGGACATGTCTTGTGGCGTTTGATTGGAGAATTTAATTCTTCCCAACGATTTCCGTTCTTCGGAGGCTTCCATCTT
- - ggtggtg
- - - - - - - - tgctctt
- - - - - - - - - - - - -tgttctg
- - - - - - - - - - - - - - - - -cccccac
- - - - - - - - - - - - - - - - - - - - - -actgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactgaa