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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggtgtaaaatgtggatagtttcatctctcaaagaggagagacctaaagggaaaatttcgcactgcacatgttgattgttataactttataatcaagcagAGGGGATGTGGCAACAGATGGCCATGAACAGCGGTGCCACAATGCAACCTGGGTCATATCCTGAGCGACCAGGTGAACCGGACTGCACTTACTACCTCAG

Basic information

species Zea mays
transcript GRMZM2G107491_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107491_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g68860.3 (Oryza sativa), 3'ss of exon 1
tggtgtaaaatgtggatagtttcatctctcaaagaggagagacctaaagggaaaatttcgcactg-cacatgttgattgttataactttataatcaa--gcagAGGGGATGTGGCAACAGATGGCCATGAACAGCGGTGCCACAATGCAACCTGGGTCATATCCTGAGCGACCAGGTGAACCGGACTGCACTTACTACCTCAG
 | | || |  |||      || |   |   || |      | ||   | |    ||   |   |     ||||   |||  |   |  |   |     |||||||| |||||||| |||||| |||||| | || ||| | | |||||||||||  |||||||||||||  | || ||||||||||||||||||||||||||
-gttttatagcgtgaccttattgacgcc--gaacaactttcatcttgtgtgcttgttggtcttggatttttgtttcatgtggtgtgtgcaatgttggttgcagAGGGTATGTGGCAGCAGATGACCATGAGCGGCAGTGGCGCTATGCAACCTGGACCATATCCTGAGCGGTCCGGAGAACCGGACTGCACTTACTACCTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagggaaaatttcgcactgcacatgttgattgttataactttataatcaagcagAGGGGATGTGGCAACAGATGGCCATGAACAGCGGTGCCACAATGCAACCTGGGTCATATCCTGAGCGACCAGGTGAACCGGACTGCACTTACTACCTCAG
                                 ttataac  putative branch site (score: 2)
                          ttgattgttataactt  TA-rich tract