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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtattatatcatattgtttttagattcagtttcatactttttgtgtatatatgcagTGAAGTACCTTATACACAATGTATACAGGTTGCAGCTGCCCATTCATGCTATTTAGTTGTTGAACTAAACATTGATTCATACTCGGAAAGTGCAAGGTTA

Basic information

species Zea mays
transcript GRMZM2G107218_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107218_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g01490.1 (Oryza sativa), 3'ss of exon 6
gtttgtattatatcatattgtttttagattcagtttcatactttttgtgtatatatgcagTGAAGTACCTTATACACAATGT-ATACAGGTTGCAGCTGCCCATTCATGCTATTTAGTTGTTGAACTAAACATTGATTCATACTCGGAAAGTGCAAGGTTA----------------------------
|| ||||| ||||     | |||  ||| | |    | | ||||||         ||  || ||||||||||||  |  | | ||||||||||||||||| ||||| ||||||||||||| |||  |||| |||||  | ||||| |||||||||||||||                            
gtctgtatgatatg----tatttgcagaattaaaccctttcttttt---------tgtggtcaagtaccttatatgccttttgatacagGTTGCAGCTGCTCATTCGTGCTATTTAGTTGCTGAGTTAAATATTGACCCTTACTCTGAAAGTGCAAGGTTATGTCTCCTTGGTGCAGACCACCTTAAGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattatatcatattgtttttagattcagtttcatactttttgtgtatatatgcagTGAAGTACCTTATACACAATGTATACAGGTTGCAGCTGCCCATTCATGCTATTTAGTTGTTGAACTAAACATTGATTCATACTCGGAAAGTGCAAGGTTA
     tatcatattgttttta  TA-rich tract