Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccgctcccatctcctcgttctcctcgattccgccggtcgattagggttcgagtcggtgtcgccgcacatcagtcgcgctgaaagattgttagctttgtcatctgagctccccgcgctgtgctcaccgattcccctctggatctcgcccatccagcgaggtctcacgaattagtgcatgggtttgcagGTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGGTAGGTCGCTCTGGCTCCGCCGCTAAGTTGTCTCTTGTCGCACCCTACGTATCT

Basic information

species Zea mays
transcript GRMZM2G107106_T06
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89761760|gb|DY689645.1|DY689645
EST:     GTTAGCCCGCCGCCGCCACCACCGGTTCACCTTCAGCTATGTCTTCTCAG                         GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGGTAGG
genomic: GTTAGCCCGCCGCCGCCACCACCGGTTCACCTTCAGCTATGTCTTCTCAGgtaccgctcc ... gggtttgcagGTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGGTAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctctggatctcgcccatccagcgaggtctcacgaattagtgcatgggtttgcagGTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGGTAGGTCGCTCTGGCTCCGCCGCTAAGTTGTCTCTTGTCGCACCCTACGTATCT
                          gtctcac  putative branch site (score: 3)
                                  aattagt  TA-rich tract