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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctcattgaatttttattttgacttatttatattaatgtggttagcacttgattaattatttgcctattctcctgaacttttgatgaagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACTTTGGCTTTCGCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACC

Basic information

species Zea mays
transcript GRMZM2G107106_T04
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G868981_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os08g41010.4 (Oryza sativa), 3'ss of exon 6
gtatgtctcattgaatttttattttgacttatttatattaatgtggttagcacttgattaattatttgcctattctcctgaacttttgatgaagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACTTTGGCTTTCGCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACC
|||| | |  |  |||    |||||||||  |    ||| || | |||  |  ||| ||   |||||     ||||  ||||||||   |  ||||||||| ||||||||||||||| | || || |||||| | ||||| |||||||  || || ||||||||||| |||||||||||||| ||||| |||||
gtatatattttcaaatga--attttgactgttc---attgattttgttgtccattggtt---tattt-----ttcttatgaacttt-attttagGAGCTGGGCGTGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACTTTGCATTCCGGACAGTCTGTAACATGAGAAAGTGCAATACACCAAGACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28576016|gb|CB281908.1|CB281908
EST:     CACAAGGGCTGGCTCATATTCTGATGAAGGTTCTCAGAAGAAGCCTGCAG                         GAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACT
genomic: CACAAGGGCTGGCTCATATTCTGATGAAGGTTCTCAGAAGAAGCCTGCAGgtatgtctca ... tttgatgaagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACT
EST: gi|29543972|gb|CB604352.1|CB604352
EST:     CACAAGGGCTGGCTCATATTCTGATGAAGGTTCTCAGAAGAAGCCTGCAG                         GAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACT
genomic: CACAAGGGCTGGCTCATATTCTGATGAAGGTTCTCAGAAGAAGCCTGCAGgtatgtctca ... tttgatgaagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgtggttagcacttgattaattatttgcctattctcctgaacttttgatgaagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACTTTGGCTTTCGCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACC
                                           ctttt  CT-rich tract
            acttgattaattattt  TA-rich tract