Sequence
atgc intronic sequence ATGC exonic sequencegtgctcttattggttattggatcgctgtgtgtaatttgtttctttccctttgagAGCCTTTCTAGTTTCTTGGGCAGGCTCTTGAGCTACCAAGCATGTCAGATTCAAATGTGAAGTGGATTGATGGGCTCCAGTTCACATCATTGTACTGGCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G107101_T06 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g08700.3 (Oryza sativa), 3'ss of exon 2
gtgctcttattggttattggatcgctgtgtgtaatttgtttctttccctttgagAGCCTTTCTAGTTTCTTGGGCAGGCTCTTGAGCTACCAAGCATGTCAGATTCAAATGTGAAGTGGATTGATGGGCTCCAGTTCACATCATTGTACTGGCC-----------------------
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gtgcttttattgctaactggagcagtttgtgtagtttctttctttctctttgagaattctctcagtttcttgggcagGCTCTTGAGCTACCAAGTATGTCAGCTTCAAATGAGAAGTGGATTGATGGGCTCCAGTTCTCATCACTGTTCTGGCCCCCACCACAGGATTCACAACAAA
upper sequence: GRMZM2G107101_T06 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g08700.4 (Oryza sativa), 3'ss of exon 2
gtgctcttattggttattggatcgctgtgtgtaatttgtttctttccctttgagAGCCTTTCTAGTTTCTTGGGCAGGCTCTTGAGCTACCAAGCATGTCAGATTCAAATGTGAAGTGGATTGATGGGCTCCAGTTCACATCATTGTACTGGCC-----------
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gtgcttttattgctaactggagcagtttgtgtagtttctttctttctctttgagaattctctcagTTTCTTGGGCAGGCTCTTGAGCTACCAAGTATGTCAGCTTCAAATGAGAAGTGGATTGATGGGCTCCAGTTCTCATCACTGTTCTGGCCCCCACCACAGG
upper sequence: GRMZM2G107101_T06 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g08700.5 (Oryza sativa), 3'ss of exon 2
-----------------------------------------------------------------------------------gtgctcttattggttattggatcgctgtgtgtaatttgtttctttccctttgagAGCCTTTCTAGTTTCTTGGGCAGGCTCTTGAGCTACCAAGCATGTCAGATTCAAATGTGAAGTGGATTGATGGGCTCCAGTTCACATCATTGTACTGGCC
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gcaagtagcttataagaagatttggactttggtggcataaatggatgaactaactggcggcttcaacgtggtgttgattacagGTGCTTTTATTGCTAACTGGAGCAGTTTGTGTAGTTTCTTTCTTTCTCTTTGAGAATTCTCTCAGTTTCTTGGGCAGGCTCTTGAGCTACCAAGTATGTC------------------------------------------------------ atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgctcttattggttattggatcgctgtgtgtaatttgtttctttccctttgagAGCCTTTCTAGTTTCTTGGGCAGGCTCTTGAGCTACCAAGCATGTCAGATTCAAATGTGAAGTGGATTGATGGGCTCCAGTTCACATCATTGTACTGGCC
tttgtttctttccctt CT-rich tract
taatttgtttcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgctcttattggttattggatcgctgtgtgtaatttgtttctttccctttgagAGCCTTTCTAGTTTCTTGGGCAGGCTCTTGAGCTACCAAGCATGTCAGATTCAAATGTGAAGTGGATTGATGGGCTCCAGTTCACATCATTGTACTGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA