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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatggtacttgactggttgggacggtaatgctggtcttatagcttcttatataaccactcattgcaaattttagtcagtatgacatatgctgttatccagGGTAACTTGAATTTGATCACACAAGCATTGGAAGCAGTTGGGCGTAAGATGAGAGTTCTACCAGACCCTTCTACAGTTCATTTCCACCTACCCGGTGATC

Basic information

species Zea mays
transcript GRMZM2G106531_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G106531_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os11g36440.1 (Oryza sativa), 3'ss of exon 1
gatggtacttgactggttgggacggtaatgctggtcttatagcttcttatataaccactcattgcaaatttta--gtcagtatgacat-atg-ctgttatccagGGTAACTTGAATTTGATCACACAAGCATTGGAAGCAGTTGGGCGTAAGATGAGAGTTCTACCAGACCCTTCTACAGTTCATTTCCACCTACCCGGTGATC
 |  ||| | | |  ||  ||  || | |  ||| |  |||   | || | |  |   | | ||   ||||||   | |||||||| |  || |||| |||||||| |||||||||||||| ||||||||| | ||||||||||||| |||||||  |||| |||| || |||||||| ||||||||||||||||| ||||| |
-agagtaat-gccatgtgtgggtgggactagtggccg-ataatgt-ttgtttgtctcttgagtgttgattttatcttaagtatgactttgtgtctgtgatccagGGGAACTTGAATTTGATTACACAAGCACTAGAAGCAGTTGGGCATAAGATGGAAGTTATACCGGATCCTTCTACGGTTCATTTCCACCTACCTGGTGACC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttatataaccactcattgcaaattttagtcagtatgacatatgctgttatccagGGTAACTTGAATTTGATCACACAAGCATTGGAAGCAGTTGGGCGTAAGATGAGAGTTCTACCAGACCCTTCTACAGTTCATTTCCACCTACCCGGTGATC
   atataac  putative branch site (score: 3)
                    aaattttagt  TA-rich tract