1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atggttgttgtatgatgatgatggcgcatggcggctgccaacgcctgtttttccccgctgcagtacctttgcttcactgatattagcaacctctatccagGATTCCAGGTTCTCAACACAACAGACAACACCGCTCACCGCATATATATATATATAGATGGGTTCCGAGGGGCCTTCTCCCGTCACCGTCCACGTCACCG
species | Zea mays |
transcript | GRMZM2G105523_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
tgtttttccccgctgcagtacctttgcttcactgatattagcaacctctatccagGATTCCAGGTTCTCAACACAACAGACAACACCGCTCACCGCATATATATATATATAGATGGGTTCCGAGGGGCCTTCTCCCGTCACCGTCCACGTCACCG
cactgat putative branch site (score: 41)
cctctatcc putative PPT
tgatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atggttgttgtatgatgatgatggcgcatggcggctgccaacgcctgtttttccccgctgcagtacctttgcttcactgatattagcaacctctatccagGATTCCAGGTTCTCAACACAACAGACAACACCGCTCACCGCATATATATATATATAGATGGGTTCCGAGGGGCCTTCTCCCGTCACCGTCCACGTCACCG
- - -tgttgta
- - - - - - tgatgat
- - - - - - - - - - - -gcgcatg
- - - - - - - - - - - - - - - gcggctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcagtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttcac