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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtgctccctgcgccgcattcattcgtgtcactaagaggagaggtgaggactgtgagtaactgacagacacgtacgctgactgctgctgcatgcagGTACGACCCTGACCGCCCCAAGTACCTTGCCCCGTTCTCCGAGCAGACGTCGTCGTACCTGACGGGCGAGTTCCCCGGCGACTACGGGTGGGACACCGCG

Basic information

species Zea mays
transcript GRMZM2G105518_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G105518_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g39610.1 (Oryza sativa), 3'ss of exon 1
gtacgtgctccctgcgccgcattcattcgtgtcactaagaggagaggtgaggactgtgagtaactgacagacacgtacgc-tgactgctgctgcatgcagGTACGACCCTGACCGCCCCAAGTACCTTGCCCCGTTCTCCGAGCAGACGTCGTCGTACCTGACGGGCGAGTTCCCCGGCGACTACGGGTGGGACACCGCG
            | ||  || | ||| | |||   ||  |  | | ||   |  | |  |||     ||    |  ||     | |     |   |||||||| |  |||||||| ||||||||||| | ||||||||| ||||||||| | ||||||||||| || |||||||| || ||||||||||||||||| |||
-----------gtacgtagcgtacatgcatgtatatacaaacataagtactgtatatatgtacactgcaattgctaacatacaagtatatatatgtgcagGTATGGACCTGACCGTCCCAAGTACCTGGGCCCGTTCTCGGAGCAGACGCCATCGTACCTGACCGGAGAGTTCCCGGGAGACTACGGGTGGGACACGGCG

upper sequence: GRMZM2G105518_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA02G47560.1 (Glycine max), 3'ss of exon 1
gtacgtgctccctgcgccgcattcattcgtgtcactaagaggagaggtgaggactgtgagtaactgacagacacgtacgctgactgctgctgcatgcagGTACGACCCTGACCGCCCCAAGTACCTTGCCCCGTTCTCCGAGCAGACGTCGTCGTACCTGACGGGCGAGTTCCCCGGCGACTACGGGTGGGACACCGCG
    ||   | |  |       | ||| |||| | ||     |  |      ||| | |||   ||  |  || | ||    ||  |          ||||| | |||||| || ||||||||||| |  || ||||| |||||||   |||| |||||||| || || |||||||| |||||||| |||||||| || 
----gtaa-ctcaacattatgattattagtgttattattgttatggaatgtaactataagt---tggtatgcatgaacaa-aacaac----------agGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCCGTCATACCTGACCGGAGAATTCCCCGGTGACTACGGATGGGACACTGCT

upper sequence: GRMZM2G105518_T01 (Zea mays), 3'ss of exon 1
lower sequence: EDP01602 (Chlamydomonas reinhardtii), 3'ss of exon 2
gtacgtgctccctgcgccgcattcattcgtgtcactaagaggagaggtgaggactgtgagtaactgacagacacgtacgctgactgctgctgcatgcagGTACGACCCTGACCGCCCCAAGTACCTTGCCCCGTTCTCCGAGCAGACGTCGTCGTACCTGACGGGCGAGTTCCCCGGCGACTACGGGTGGGACACCGCG--------------------------
                  |    |||| |  |   | || |           |||     || |  | |  |  | |  |      |  |||    |     |  |||   || | || ||  || | | | |       |   |||  |  | |||||||| ||||||||||||||||||||||| |||||||| ||                           
------------------gtgcccatttgaatgtgttagtgactgaaccccaacttc---tagcgcatacgcctgcattcatgtgacccctgtcctcttccgcttcccgcccctctcccagGCCCCTACTCTGAG----AACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCGGCGACTACGGCTGGGACACTGCTGGTCTGTCCGCTGACCCGGAGACCTT

upper sequence: GRMZM2G105518_T01 (Zea mays), 3'ss of exon 1
lower sequence: EDO96390 (Chlamydomonas reinhardtii), 3'ss of exon 3
gtacgtgctccctgcgccgcattcattcgtgtcactaagaggagaggtgaggactgtgagtaactgacagacacgtacgctgactgctgctgcatgcagGTACGACCCTGACCGCCCCAAGTACCTTGCCCCGTTCTCCGAGCA-GACGTCGTCG--TACCTGACGGGCGAGTTCCCCGGCGACTACGGGTGGGACACCGCG--------------------------
                  |||  ||  | |||  ||   || | |      | |  ||      ||  |  || | | |||| |        || |  ||   |||| || |  | ||       | | ||| | ||||||| | | |  |  ||  |||||||| ||||||||||||||||||||||| |||||||||||                           
---------------tgagcagccagccttgttcctgccag-aaacccagcgcccatg-----ttg--aagcatgcatgctgtcca-----acacgtcggcctgaccttgtcaccaccccccttgtagGCCCCTACTCCGAGAATGCCACCCCCGCCTACCTGACTGGCGAGTTCCCCGGCGACTACGGCTGGGACACCGCCGGTCTGTCGGCTGACCCGGAGACCTT

upper sequence: GRMZM2G105518_T01 (Zea mays), 3'ss of exon 1
lower sequence: EDP01725 (Chlamydomonas reinhardtii), 3'ss of exon 2
gtacgtgctccctgcgccgcattcattcgtgtcactaagaggagaggtgaggactgtgagtaactgacagacacgtacgctgactgctgctgcatgcagGTACGACCCTGACCGCCCCAAGTACCTTGCCCCGTTCTCCGAGCA-GACGTCGTCGTACCTGACGGGCGAGTTCCCCGGCGACTACGGGTGGGACACCGCG--------------------------
         |  |||   ||   |||||   | ||        |    | |  ||| |      ||  | |   ||  |||| |     |  | | |   | |  |||   |   |||| |       |||   |||  || |  |||  |  | |||||||| ||||||||||||||||||||||| |||||||| ||                           
--------ccagtgcctggcggacattccgcttac--------gctacgtgccctggggtccgttgcgatatg-gtgtgctgcccttaccctcttccgcttcccgccc---ctctcccagGC------CCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCGGCGACTACGGCTGGGACACTGCCGGTCTGTCGGCTGACCCGGAGACCTT

upper sequence: GRMZM2G105518_T01 (Zea mays), 3'ss of exon 1
lower sequence: EDP01611 (Chlamydomonas reinhardtii), 3'ss of exon 2
gtacgtgctccctgcgccgcattcattcgtgtcactaagaggagaggtgaggactgtgagtaactgacagacacgtacgctgactgctgctgcatgcagGTACGACCCTGACCGCCCCAAGTACCTTGCCCCGTTCTCCGAGCA-GACGTCGTCGTACCTGACGGGCGAGTTCCCCGGCGACTACGGGTGGGACACCGCG--------------------------
               |  |||    | || |   ||    | || | |   |    || | | |    | |   || ||||   | |  ||||  |  |      | |   |  ||       ||    ||   |||  || |  |||  |  |||||||||| ||||||||||||||||||||||| |||||||||||                           
--------------tgatgcacgt-tccgcgcggct----gtagggctcgagcgcttgtgcatcgtcaatatgggtccgct---taccactgcgcgttgcctttgctcctgcttccttgcagGCC----CCTACTCTGAGAACGCGACCCCCGCGTACCTGACTGGCGAGTTCCCCGGCGACTACGGCTGGGACACCGCCGGCCTGTCCGCTGACCCGGAGACCTT

upper sequence: GRMZM2G105518_T01 (Zea mays), 3'ss of exon 1
lower sequence: EDP03051 (Chlamydomonas reinhardtii), 3'ss of exon 2
-------------------------------------------------------------gtacgtgctccctgcgccgcattcattcgtgtcactaagaggagaggtgaggactgtgagtaactgacagacacgtacgctgac-tgctg-ctgcatgcagGTACGACCCTGACCGCCCCAAGTACCTT--GCCCCGTTCTCCGAGCA-GACGTCGTCG--TACCTGACGGGCGAGTTCCCCGGCGACTACGGGTGGGACACCGCG--------------------------
                                                             || | | |  ||||  | |||     |  |  || | | | |  | |  || | || |  |  ||| |  |  | | | | ||  |||   ||  || | |     ||| |   |    |   | | |   | ||| ||||| |||   |||  |  ||  |||||||| ||||||||||||||||||||||| |||||||||||                           
gtgagttacgcaagatggctcttcagggaccgccttacgccttgcagctgagagcttcactgtgccttcaacctgacctgcaaatgcttattacattcataagcaacgccagcagtgcggatctctggcc-atccttgctcggatatgcgaactcgatactgactttacctttgtcatgtcgtttgcttgcagGCCCCTTCTCGGAGGGCGACACCCCCGCCTACCTGACTGGCGAGTTCCCCGGCGACTACGGCTGGGACACCGCCGGTCTGTCGGCTGACCCGGAGACCTT

upper sequence: GRMZM2G105518_T01 (Zea mays), 3'ss of exon 1
lower sequence: EDP02923 (Chlamydomonas reinhardtii), 3'ss of exon 2
gtacgtgctccctgcgccgcattcattcgtgtcactaagaggagaggtgaggactgtgagtaactgacagacacgtacgctgactgctgctgcatgcagGTACGACCCTGACCGCCCCAAGTACCTTGCCCCGTTCTCCGAGCAGACGTCGTCGTACCTGACGGGCGAGTTCCCCGGCGACTACGGGTGGGACACCGCG--------------------------
                  | || |  | |         |         |      | ||    ||      | ||  |     ||| | |||  ||||     ||     ||| || || |  ||||  | ||     |||    ||  |  | |||||||| ||||||||||||||||||||||| |||||||||||                           
---------------caaggatccggttgcacgttgtcggctttcttcgcctttcgcgatcttcttttgagcccgcccctgccctgttcctg-gtgcattggtgat----accaccacagGCCCCTT--CTCGGAGGGCGAC---ACCCCCGCCTACCTGACTGGCGAGTTCCCCGGCGACTACGGCTGGGACACCGCCGGTCTGTCGGCTGACCCGGAGACCTT

upper sequence: GRMZM2G105518_T01 (Zea mays), 3'ss of exon 1
lower sequence: EDP01724 (Chlamydomonas reinhardtii), 3'ss of exon 2
gtacgtgctccctgcgccgcattcattcgtgtcactaagaggagaggtgag-gactgtgagtaactgacagacacgtacgctgactgctgctgcatgcagGTACGACCCTGACCGCC-CCAAGTACCTTGCCCCGTTCTCCGAGCA---GACGTCGTCGTACCTGACGGGCGAGTTCCCCGGCGACTACGGGTGGGACACCGCG--------------------------
                              ||  | |   | |   || || |||||      |    |   | | |||||   | |       |  |  || |    | |    || ||     ||  | ||| | ||| ||| |   |||  |  | |||||||| ||||||||||||||||||||||| |||||||| ||                           
------------------------------gtgcccacttgaatgtgttagtgactgaaccccaacttctagcgcatacgcctgcagtcatgtgacccctgtcctcttccgcttcccgcccctctcccagGCCCCTACTCTGAGAACTCGACCCCCGCCTACCTGACTGGCGAGTTCCCCGGCGACTACGGCTGGGACACTGCCGGTCTGTCGGCTGACCCGGAGACCTT

upper sequence: GRMZM2G105518_T01 (Zea mays), 3'ss of exon 1
lower sequence: EDP00188 (Chlamydomonas reinhardtii), 3'ss of exon 3
------------gtacgtgctccctgcgccgcattcattcgtgtcactaagaggagaggtgaggactgtgagtaac--tgacagacacgtacgctgactgctgctgcatgcagGTACGACCCTGACCGCCCCAAGTACCTTGCCCCGTTCTCCGAGCAG----ACGTCGTCGTACCTGACGGGCGAGTTCCCCGGCGACTACGGGTGGGACACCGCG------------------
            | |||||| | ||    ||   |  ||||| |    ||   | |   |   |   | |  | ||  ||       | |   |  | |   || |       ||||     |  | |||   |||   | ||   |  | | |||| |    ||  |  | |||||||| ||||||||||||||||||||||| |||||| ||||                   
gtaagcaccgcagcacgtgcccgct----cgtccttcttcgtctacgcaacccgcggcctctcgctcgcgcatgaccatggtttctgcatttccctaatcgcgccgttgctctgtacatttgttcctgcctgcagTCTGTGGCTGGGCCCCCTGAGCGGCACCACTCCCGCCTACCTGACTGGCGAGTTCCCCGGCGACTACGGCTGGGACTCCGCCGGTCTGTCGGCTGACCCC

upper sequence: GRMZM2G105518_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S463_10V6.1 (Physcomitrella patens), 3'ss of exon 1
--gtacgtgctccctgcgccgcattcattcgtgtcactaagaggaga--ggtgaggact-gtgagtaac---tgacagacacgtacgctg-actgctgctgcatgcagGTACGACCCTGACCGCCCCAAGTACCTTGCCCCGTTCTCCGAGCAGACGTCGTCGTACCTGACGGGCGAGTTCCCCGGCGACTACGGGTGGGACACCGCG
  ||  | ||| |       ||     |  |  |  || ||  || |  |||||||  | | ||| |||   || |  |  || |||  | |||| ||||     ||||||||   ||||||| ||||||| | | | ||| |||||||   ||||  ||||||||||||| ||||||||| | || |||||||||||||||||||| 
gggtcagagctgct---atggcgagggtgtgcattgctgaggtgacattggtgagggatagagaggaacgtatgcctaagccgaacgtcggactgttgct-----cagGTACGGAGCTGACCGACCCAAGTTCTTGGGCCCCTTCTCCGGCGAGACTCCGTCGTACCTGACCGGCGAGTTCGCTGGAGACTACGGGTGGGACACCGCC

upper sequence: GRMZM2G105518_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S1_625V6.1 (Physcomitrella patens), 3'ss of exon 1
--gtacgt-gctcc--ctgcgccgcattcatt-cgtgtcactaagaggagag-gtgaggactgtgagtaactgacagacacgtacgctgactgctgctgcatgcagGTACGACCCTGACCGCCCCAAGTACCTTGCCCCGTTCTCCGAGCAGACGTCGTCGTACCTGACGGGCGAGTTCCCCGGCGACTACGGGTGGGACACCGCG
   | | | ||| |  ||| |   |  ||| | |   |||   |  |||||| ||   || ||      | ||        |||   |   || ||   ||    |||| |   ||||||| ||||||| ||| | ||| || ||||   ||||  ||||||||||||  ||||||||| | || |||||||||||||||||||| 
ctttccatcgctacaactgtgattctctcagtactcatcatcgattggagagtgtagagaatgcagcgcattgttgaga--gtagtttcgatgttgtcaca----gGTATGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCCGTCGTACCTGAACGGCGAGTTCGCTGGAGACTACGGGTGGGACACCGCT

upper sequence: GRMZM2G105518_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S1_21V6.1 (Physcomitrella patens), 3'ss of exon 1
--gtacgtgctccctgcgccgcattcattcgtgtcactaagaggaga--ggtgaggact-gtgagtaac---tgacagacacgtacgctg-actgctgctgcatgcagGTACGACCCTGACCGCCCCAAGTACCTTGCCCCGTTCTCCGAGCAGACGTCGTCGTACCTGACGGGCGAGTTCCCCGGCGACTACGGGTGGGACACCGCG
  ||  | ||| |       ||     |  |  |  || ||  || |  |||||||  | | ||| |||   || |  |  || |||  | |||| ||||     ||||||||   ||||||| ||||||| | | | ||| |||||||   ||||  ||||||||||||| ||||||||| | || |||||||||||||||||||| 
gggtcagagctgct---atggcgagggtgtgcattgctgaggtgacactggtgagggatagagaggaacgtatgcctaagccgaacgtcggactgttgct-----cagGTACGGAGCTGACCGACCCAAGTTCTTGGGCCCCTTCTCCGGCGAGACTCCGTCGTACCTGACCGGCGAGTTCGCTGGAGACTACGGGTGGGACACCGCC

upper sequence: GRMZM2G105518_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S51_305V6.1 (Physcomitrella patens), 3'ss of exon 1
gtacgtgctccctgcgccgcattcattcgtgtcactaagaggagag-gtgaggactgtga-gtaactgacagacacgtacgctga--ctgctgctgcatg-cagGTACGACCCTGACCGCCCCAAGTACCTTGCCCCGTTCTCCGAGCAGACGTCGTCGTACCTGACGGGCGAGTTCCCCGGCGACTACGGGTGGGACACCGCG
    | | |  |   |  ||     | || |  | |     | ||  |||    | | ||     |  || ||    || |  ||   || | |||   | ||||||||   ||||| | || |||| | | | ||| |||||||   ||||  |||| || ||||  ||||||||| ||||||||||||| ||||||||||| 
----ggggttgcaagggagccccattccgagagagtgcattgtgaatgtggaatccgggatagggcgaaccgatgtctaagtggaaattggtactggtggtcagGTACGGAGCTGACAGGCCAAAGTTCTTGGGCCCATTCTCCGGCGAGACCCCGTCATATCTGAATGGCGAGTTCGCCGGCGACTACGGATGGGACACCGCT

upper sequence: GRMZM2G105518_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S27_97V6.1 (Physcomitrella patens), 3'ss of exon 1
gtacgtgctccc-tgcgccgcattcattcgtgtcactaaga--ggagaggtgaggactgtgagtaactgacagacacgtacgctgactgctgctgcatgcagGTACGACCCTGACCGCCCCAAGTACCTTGCCCCGTTCTCCGAGCAGACGTCGTCGTACCTGACGGGCGAGTTCCCCGGCGACTACGGGTGGGACACCGCG
  |||| ||||  | | ||||   |       |    ||    ||   | |  |  |      |  ||  |  | | |||    ||    |     |||||||||||   | ||||| ||||||||  | | ||| ||||| |   ||||  | || |||||||| || |||||| |||| ||||||||||||||||| || 
-aacgtactcctgttcaccgctgccgaggtgattgagaacgccgggttgttctgctccccctattgcttcctaata-gtagctcgatatatttgtaatgcagGTACGGTGCCGACCGACCCAAGTATTTAGGCCCCTTCTCTGGAGAGACCCCTTCATACCTGACTGGTGAGTTCGCCGGTGACTACGGGTGGGACACTGCT

upper sequence: GRMZM2G105518_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S1_629V6.1 (Physcomitrella patens), 3'ss of exon 1
----gtacgtgctccctgcgccgcattcattcgtgtcactaagaggagaggtgaggactgtgagtaactgacagacacgtacgctgactgctgctgca----tgcagGTACGACCCTGACCGCCCCAAGTACCTTGCCCCGTTCTCCGAGCAGACGTCGTCGTACCTGACGGGCGAGTTCCCCGGCGACTACGGGTGGGACACCGCG
      | |     ||   ||||    | | | |    |||||   | |  |||      | || |||  |||||  | |   | || |  || | |     ||||||||||   ||||||| ||||||| ||| | ||| || ||||   ||||  ||||||||||||  ||||||||| | || |||||||||||||||||||| 
gctgaaatggagctccactgccgaggacgtccat--tgctaagcccaaatctga-----tttagaaacgaacagatgcctgatccgaatcatggttctgatttgcagGTACGGAGCTGACCGACCCAAGTTCCTGGGCCCCTTTTCCGGCGAGACCCCGTCGTACCTGAACGGCGAGTTCGCTGGAGACTACGGGTGGGACACCGCT

upper sequence: GRMZM2G105518_T01 (Zea mays), 3'ss of exon 1
lower sequence: EFJ11993 (Selaginella moellendorffii), 3'ss of exon 1
gtacgtgctccctgcgccgcattcattcgtgtcactaagaggagaggtgaggactgtgagtaactgacaga-cacgtacgctgactgctgctgcat--gcagGTACGACCCTGACCGCCCCAAGTACCTTGCCCCGTTCTCCGAGCAGACGTCGTCGTACCTGACGGGCGAGTTCCCCGGCGACTACGGGTGGGACACCGCG
    |  || |      | || ||  |    |   |      | |        ||  |||    ||| ||| ||    |||| |||  || || ||   |||||| |  || ||||| || |||| ||| | ||| ||||||||||||||  | || ||||| || |||||||| || ||||||||||| ||||| ||||||
tcgagctcttcaaagctcacagtcgctgacttggttgtctccacac-catttccttcgagctcttgaaagatcatagtcgctaact-ttgttgtatccacagGTATGGTCCAGACCGACCAAAGTTCCTCGGCCCCTTCTCCGAGCAGACACCCTCCTACCTCACCGGCGAGTTTCCTGGCGACTACGGCTGGGATACCGCG