Sequence
atgc intronic sequence ATGC exonic sequencegtacgcctctaccattttttttaatatgtttccgttcacgtctcccgttgccggcttttgtttagctgagcgcgcgcctgagccctgaggtggcggtttctttcgcatgcagTGGGCTGGGGCTGCTTCGGGATGGGCTTCACCCGGAAGGCCGACGAGGACCCGGAGCCCGGGCGGTGCCGGCGCACGGACGGCAAGAAGTGGCGCTGCTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G105335_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g53690.1 (Oryza sativa), 3'ss of exon 1
gtacgcctctaccattttttttaatatgtttccgttcacgtctcccgttgccggcttttgtttagctgagcgcgcgcctgagccctgaggtggcggtttctttcgcatgcagTGGGCTGGGGCTGCTTCGGGATGGGCTTCACCCGGAAGGCCGACGAGGACCCGGAGCCCGGGCGGTGCCGGCGCACGGACGGCAAGAAGTGGCGCTGCTC---
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gtacgttacacacatcctcctccacgtacgtacgtacgcgtt----gttgccgatgct-----aacaaagtccatattgtgat-------tggtgttttctttggaatgcagTGGGGTGGGGTTGCTTTGGCATGGGGTTTGGGCGGAAGGCGGA---GGACCCGGAGCCAGGGCGATGCCGGCGTACGGACGGCAAGAAGTGGCGGTGCTCCAA
upper sequence: GRMZM2G105335_T02 (Zea mays), 3'ss of exon 1
lower sequence: EFJ24024 (Selaginella moellendorffii), 3'ss of exon 2
gtacgcctctaccattttttttaatatgtttccgttcacgtctcccgttgccggcttttgtttagctgagcgcgcgcctg--agccctgaggtggcggtttctttcgcatgcagTGGGCTGGGGCTGCTTCGGGATGGGCTTCACCCGGAAGGCCGACGAGGACCCGGAGCCCGGGCGGTGCCGGCGCACGGACGGCAAGAAGTGGCGCTGCTC------
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gtgagtgcctgctgcctttctcccttcacttcactgctcgactgcc--tcctcgctgtt-ctcagcaccttgcaccactggcaactctaaagatctccttgctttcctgtgcagTGGGCTGGGGAAACTTCCACCTTGGA---ATTCCGAA---CAATCCCGACCCGGAGCCTGGTCGGTGCCGACGAACAGACGGCAAGAAGTGGAGGTGCTCCAGGGA
upper sequence: GRMZM2G105335_T02 (Zea mays), 3'ss of exon 1
lower sequence: EFJ24588 (Selaginella moellendorffii), 3'ss of exon 2
gtacgcctctaccattttttttaatatgtttccgttcacgtctcccgttgccggcttttgtttagctgagcgcgcgcctg--agccctgaggtggcggtttctttcgcatgcagTGGGCTGGGGCTGCTTCGGGATGGGCTTCACCCGGAAGGCCGACGAGGACCCGGAGCCCGGGCGGTGCCGGCGCACGGACGGCAAGAAGTGGCGCTGCTC------
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gtgagtgcctgctgcctttctcccttcacttcactgctcgactgcc--tcctcgccgtt-ctcagcaccttgcaccactggcaactctaaagatctccttgctttcctgtgcagTGGGCTGGGGAAACTTTCACCTTGGA---ATTCCGAA---CAATCCCGACCCGGAGCCTGGTCGGTGCCGACGAACAGACGGCAAGAAGTGGAGGTGCTCCAGGGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtttagctgagcgcgcgcctgagccctgaggtggcggtttctttcgcatgcagTGGGCTGGGGCTGCTTCGGGATGGGCTTCACCCGGAAGGCCGACGAGGACCCGGAGCCCGGGCGGTGCCGGCGCACGGACGGCAAGAAGTGGCGCTGCTC
tttctttcgc CT-rich tract
tttcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacgcctctaccattttttttaatatgtttccgttcacgtctcccgttgccggcttttgtttagctgagcgcgcgcctgagccctgaggtggcggtttctttcgcatgcagTGGGCTGGGGCTGCTTCGGGATGGGCTTCACCCGGAAGGCCGACGAGGACCCGGAGCCCGGGCGGTGCCGGCGCACGGACGGCAAGAAGTGGCGCTGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT