1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aatgaacactagatgctagtaaaactcttgtcacctgcatttcagatcctgtatatcttgaacctcctttgctaacttcagtgcctattttggttgacagGCCATAACTCTTTGCCCAAATGTTGCAGTATATTGGACCAACCGAGCACTTTGCTATAGGAAGCGGAA
species | Zea mays |
transcript | GRMZM2G104769_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTTTTTCAGGAAGGAACGCCTCACCGCCGCCATCGACGCCTACACCGGG GCCATAACTCTTTGCCCAAATGTTGCAGTATATTGGACCAACCGAGCACTTEST: gi|211321471|gb|FL171489.1|FL171489
genomic: CCTTTTTCAGGAAGGAACGCCTCAGCGCCGCCATCGACGCCTACACCGGGgtaagcctga ... tggttgacagGCCATAACTCTTTGCCCAAATGTTGCAGTATATTGGACCAACCGAGCACTT
EST: CCTTTTTCAGGAAGGAACGCCTCAGCGCCGCCATCGACGCGTACACCGGG GCCATAACTCTTTGCCCAAATGTTGCAGTATATTNGGACCAACCGAGCACTEST: gi|211321469|gb|FL171487.1|FL171487
genomic: CCTTTTTCAGGAAGGAACGCCTCAGCGCCGCCATCGACGCCTACACCGGGgtaagcctga ... tggttgacagGCCATAACTCTTTGCCCAAATGTTGCAGTATATT-GGACCAACCGAGCACT
EST: CCTTTTTCAGGAAGGAACGCCTCAGCGCCGCCATCGACGCCTACACCGGG GCCATAACTCTTTGCCCAAATGTTGCAGTATATTGGACCAACCGAGCACTTEST: gi|211321468|gb|FL171486.1|FL171486
genomic: CCTTTTTCAGGAAGGAACGCCTCAGCGCCGCCATCGACGCCTACACCGGGgtaagcctga ... tggttgacagGCCATAACTCTTTGCCCAAATGTTGCAGTATATTGGACCAACCGAGCACTT
EST: CCTTTTTCAGGAAGGAACGCCTCAGCGCCGCCATCGACGCCTACACCGGG GCCATAACTCTTTGCCCAAATGTTGCAGTATAT-GGACCAACCGAGCACTTEST: gi|211321470|gb|FL171488.1|FL171488
genomic: CCTTTTTCAGGAAGGAACGCCTCAGCGCCGCCATCGACGCCTACACCGGGgtaagcctga ... tggttgacagGCCATAACTCTTTGCCCAAATGTTGCAGTATATTGGACCAACCGAGCACTT
EST: CCTTTTTCAGGAAGGAACGCCTCAGCGCCGCCATCGACGCGTACACCGGG GCCATAACTCTTTGCCCAAATGTTGCAGTATAT-GGASCAACCGAGCACTTEST: gi|94476727|gb|EB705685.1|EB705685
genomic: CCTTTTTCAGGAAGGAACGCCTCAGCGCCGCCATCGACGCCTACACCGGGgtaagcctga ... tggttgacagGCCATAACTCTTTGCCCAAATGTTGCAGTATATTGGACCAACCGAGCACTT
EST: CCTTTTTCAGGAAGGAACGCCTCAGCGCCGCCATCGACGCCTACACCGGG GCCATAACTCTTTGCCCAAATGTTGCAGTATATTGGACCAACCGAGCACTTEST: gi|211196887|gb|FL171483.1|FL171483
genomic: CCTTTTTCAGGAAGGAACGCCTCAGCGCCGCCATCGACGCCTACACCGGGgtaagcctga ... tggttgacagGCCATAACTCTTTGCCCAAATGTTGCAGTATATTGGACCAACCGAGCACTT
EST: CCTTTTTCAGGAAGGAACGCCTCAGCGCCGCCATCGACGCCTACACCGGG GCCATAACTCTTTGCCCAAATGTTGCAGTATATTGGACCAACCGAGCACTTEST: gi|61119637|gb|DN560598.1|DN560598
genomic: CCTTTTTCAGGAAGGAACGCCTCAGCGCCGCCATCGACGCCTACACCGGGgtaagcctga ... tggttgacagGCCATAACTCTTTGCCCAAATGTTGCAGTATATTGGACCAACCGAGCACTT
EST: AGGAAGGAACGCCTCAGCGCCGCCATCGACGCCTACACCGGG GCCATAACTCTTTGCCCAAATGTTGCAGTATATTGGACCAACCGAGCACTTEST: gi|211321467|gb|FL171485.1|FL171485
genomic: AGGAAGGAACGCCTCAGCGCCGCCATCGACGCCTACACCGGGgtaagcctga ... tggttgacagGCCATAACTCTTTGCCCAAATGTTGCAGTATATTGGACCAACCGAGCACTT
EST: CCTTTTTCAGGAAGGAACGCCTCAGCGCCGCCATCGACGCCTACACCGGG GCCATAACTCTTTGCCCAAATGTTGCAGTATATTGGACCAACCGAGCACTTEST: gi|211321466|gb|FL171484.1|FL171484
genomic: CCTTTTTCAGGAAGGAACGCCTCAGCGCCGCCATCGACGCCTACACCGGGgtaagcctga ... tggttgacagGCCATAACTCTTTGCCCAAATGTTGCAGTATATTGGACCAACCGAGCACTT
EST: CCTTTTTCAGGAAGGAACGCCTCAGCGCCGCCATCGACGCCTACACCGGG GCCATAACTCTTTGCCCAAATGTTGCAGTATATTGGACCAACCGAGCACTTEST: gi|149106376|gb|EE292096.2|EE292096
genomic: CCTTTTTCAGGAAGGAACGCCTCAGCGCCGCCATCGACGCCTACACCGGGgtaagcctga ... tggttgacagGCCATAACTCTTTGCCCAAATGTTGCAGTATATTGGACCAACCGAGCACTT
EST: CCTTTTTCAGGAAGGAACGCCTCAGCGCCGCCATCGACGCCTACACCGGG GCCATAACTCTTTGCCCAAATGTTGCAGTATATTGGACCAACCGAGCACTTEST: gi|91054321|gb|EB164739.1|EB164739
genomic: CCTTTTTCAGGAAGGAACGCCTCAGCGCCGCCATCGACGCCTACACCGGGgtaagcctga ... tggttgacagGCCATAACTCTTTGCCCAAATGTTGCAGTATATTGGACCAACCGAGCACTT
EST: CCTTTTTCAGGAAGGAACGCCTCAGCGCCGCCATCGACGCCTACACCGGG GCCATAACTCTTTGCCCAAATGTTGCAGTATATTGGACCAACCGAGCACTT
genomic: CCTTTTTCAGGAAGGAACGCCTCAGCGCCGCCATCGACGCCTACACCGGGgtaagcctga ... tggttgacagGCCATAACTCTTTGCCCAAATGTTGCAGTATATTGGACCAACCGAGCACTT
atcctgtatatcttgaacctcctttgctaacttcagtgcctattttggttgacagGCCATAACTCTTTGCCCAAATGTTGCAGTATATTGGACCAACCGAGCACTTTGCTATAGGAAGCGGAA
tgctaac putative branch site (score: 45)
cctatttt putative PPT
tatatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgaacactagatgctagtaaaactcttgtcacctgcatttcagatcctgtatatcttgaacctcctttgctaacttcagtgcctattttggttgacagGCCATAACTCTTTGCCCAAATGTTGCAGTATATTGGACCAACCGAGCACTTTGCTATAGGAAGCGGAA
- - aacacta
- - - - - -gatgcta
- - - - - - - - - - - - - - - - acctgca
- - - - - - - - - - - - - - - - - - - - - - gatcctg