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...agtttctgcgcctcacctgcttgatcgatctggcgattttaacctctttgtcctttggagaagttcctcatcttcagagtcgtgtcgtggggcgtgctagGTGGGAGGGCGGGGCGGAGGAGCTGGAGGTTCCTGGTAGCGGCTGCCGCCGGCCATGGAGAAGAGGAAGCGGATCCTGGAGCTGCGGGATCGGCTGGACC
species | Zea mays |
transcript | GRMZM2G104449_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCTCCCCCGTCTTTCGTCTCCGGTTGCATCCCCGACGTCCTCGCCTGCG GTGGGAGGGCGGGGCGGACGAGCTGGAGGTTCCTGGTAGCGGCTGCCGCCGEST: gi|149078013|gb|EE166751.2|EE166751
genomic: TCCTCCCCCGTCTTTCGTCTCCGGTTGCATCCCCGACGTCCTCGCCTGCGgtgagcgact ... ggcgtgctagGTGGGAGGGCGGGGCGGAGGAGCTGGAGGTTCCTGGTAGCGGCTGCCGCCG
EST: GTCTCCGGTTGCATCCCCGACGTCCTCGCCTGCG GTGGGAGGGCGGGGCGGAGGAGCTGGAGGTTCCTGGTAGCGGCTGCCGCCGEST: gi|71429317|gb|DR810367.1|DR810367
genomic: GTCTCCGGTTGCATCCCCGACGTCCTCGCCTGCGgtgagcgact ... ggcgtgctagGTGGGAGGGCGGGGCGGAGGAGCTGGAGGTTCCTGGTAGCGGCTGCCGCCG
EST: CGTCTCCGGTTGCATCCCCGACGTCCTCGCCTGCG GTGGGAGGGCGGGGCGGAGGAGCTGGAGGTTCCTGGTAGCGGCTGCCGCCGEST: gi|76014645|gb|DT941815.1|DT941815
genomic: CGTCTCCGGTTGCATCCCCGACGTCCTCGCCTGCGgtgagcgact ... ggcgtgctagGTGGGAGGGCGGGGCGGAGGAGCTGGAGGTTCCTGGTAGCGGCTGCCGCCG
EST: CGTCTCCGGTTGCATCCCCGACGTCCTCGCCTGCG GTGGGAGGGCGGGGCGGAGGAGCTGGAGGTTCCTGGTAGCGGCTGCCGCCGEST: gi|211453618|gb|FL253931.1|FL253931
genomic: CGTCTCCGGTTGCATCCCCGACGTCCTCGCCTGCGgtgagcgact ... ggcgtgctagGTGGGAGGGCGGGGCGGAGGAGCTGGAGGTTCCTGGTAGCGGCTGCCGCCG
EST: TCCTCCCCCGTCTTTCGTCTCCGGTTGCATCCCCGACGTCCTCGCCTGCG GTGGGAGGGCGGGGCGGAGGAGCTGGAGGTTCCTGGTAGCGGCTGCCGCCGEST: gi|149084046|gb|EE173442.2|EE173442
genomic: TCCTCCCCCGTCTTTCGTCTCCGGTTGCATCCCCGACGTCCTCGCCTGCGgtgagcgact ... ggcgtgctagGTGGGAGGGCGGGGCGGAGGAGCTGGAGGTTCCTGGTAGCGGCTGCCGCCG
EST: TCCTCCCCCGTCTTTCGTCTCCGGTTGCATCCCCGACGTCCTCGCCTGCG GTGGGAGGGCGGGGCGGAGGAGCTGGAGGTTCCTGGTAGCGGCTGCCGCCGEST: gi|93284538|gb|EB676802.1|EB676802
genomic: TCCTCCCCCGTCTTTCGTCTCCGGTTGCATCCCCGACGTCCTCGCCTGCGgtgagcgact ... ggcgtgctagGTGGGAGGGCGGGGCGGAGGAGCTGGAGGTTCCTGGTAGCGGCTGCCGCCG
EST: TCCTCCCCCGTCTTTCGTCTCCGGTTGCATCCCCGACGTCCTCGCCTGCG GTGGGAGGGCGGGGCGGAGGAGCTGGAGGTTCCTGGTAGCGGCTGCCGCCG
genomic: TCCTCCCCCGTCTTTCGTCTCCGGTTGCATCCCCGACGTCCTCGCCTGCGgtgagcgact ... ggcgtgctagGTGGGAGGGCGGGGCGGAGGAGCTGGAGGTTCCTGGTAGCGGCTGCCGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtttctgcgcctcacctgcttgatcgatctggcgattttaacctctttgtcctttggagaagttcctcatcttcagagtcgtgtcgtggggcgtgctagGTGGGAGGGCGGGGCGGAGGAGCTGGAGGTTCCTGGTAGCGGCTGCCGCCGGCCATGGAGAAGAGGAAGCGGATCCTGGAGCTGCGGGATCGGCTGGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - -ctgcgcc
- - - - - - - -cctgctt