1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...attagcatatgaatttacccatttaagtatatccaagagtcttacctttttttaactcgttacaagtaatataactttatatttaacgacaccactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGATGAGTCAGAGGTTAAACTGCATCAGAGATTGGAAAAGCTTTACTTATCGA
species | Zea mays |
transcript | GRMZM2G104166_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGATEST: gi|211304270|gb|FL115007.1|FL115007
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG GGTGTGTTCAAGCAGEST: gi|74236878|gb|DT644792.1|DT644792
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAG
EST: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGATEST: gi|50336720|gb|CO531846.1|CO531846
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGATEST: gi|148996413|gb|EE035708.2|EE035708
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGATEST: gi|33466753|gb|CF243802.1|CF243802
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGATEST: gi|76283090|gb|DV022658.1|DV022658
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGATEST: gi|91873694|gb|EB403651.1|EB403651
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGATEST: gi|148981761|gb|EE027867.2|EE027867
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGATEST: gi|148970807|gb|EE021570.2|EE021570
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGATEST: gi|76927135|gb|DV171161.1|DV171161
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGATEST: gi|93012221|gb|EB637741.1|EB637741
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
ctttttttaactcgttacaagtaatataactttatatttaacgacaccactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGATGAGTCAGAGGTTAAACTGCATCAGAGATTGGAAAAGCTTTACTTATCGA
ttacaagtaatataac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attagcatatgaatttacccatttaagtatatccaagagtcttacctttttttaactcgttacaagtaatataactttatatttaacgacaccactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGATGAGTCAGAGGTTAAACTGCATCAGAGATTGGAAAAGCTTTACTTATCGA
- - gcatatg