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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attagcatatgaatttacccatttaagtatatccaagagtcttacctttttttaactcgttacaagtaatataactttatatttaacgacaccactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGATGAGTCAGAGGTTAAACTGCATCAGAGATTGGAAAAGCTTTACTTATCGA

Basic information

species Zea mays
transcript GRMZM2G104166_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104166_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os04g45670.1 (Oryza sativa), 3'ss of exon 1
--attagcatatgaatttacccatttaagtatatccaagagtcttacctttttttaactcgttacaagtaatataactttatatttaacgacaccactgcagGGTGTGTTCAAGCAGTTTGG------CTACGGGAATTCTGATAATGCGTTTACAGATGAGTCAGAGGTTAAACTGCATCAGAGATTGGAAAAGCTTTACTTATCGA
    | | ||||    ||    |||||| |  ||| || ||||   |  ||||| | || | ||  |   || |||| || ||  |  | |||||| ||||||| ||||| ||||  |||||      ||| || ||||| || ||||||||||||||||| ||||| ||||| || || |||||  ||||||| |||||||      
gttgtgggatattttcttggt-atttaactgcatcgaaaagtca-gctctttttaatcttggtatgaaccatgtaacattgtacctgtctacaccattgcagGGCGTGTTTAAGCCATTTGGAGCTGCCTATGGAAATTCAGAAAATGCGTTTACAGATGAATCAGAAGTTAATCTACACCAGAGGCTGGAAAAACTTTACT------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93012221|gb|EB637741.1|EB637741
EST:     AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG                         GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: gi|91056507|gb|EB166925.1|EB166925
EST:     AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG                         GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: gi|50336720|gb|CO531846.1|CO531846
EST:     AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG                         GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: gi|148970807|gb|EE021570.2|EE021570
EST:     AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG                         GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: gi|91873694|gb|EB403651.1|EB403651
EST:     AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG                         GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: gi|211195883|gb|FL115001.1|FL115001
EST:     AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG                         GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: gi|211304270|gb|FL115007.1|FL115007
EST:     AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG                         GGTGTGTTCAAGCAG
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAG
EST: gi|211195880|gb|FL114998.1|FL114998
EST:     AGGCGCTGTGGAAGCAGGCCTTCAGGCTCAAGGACCAGGTCTCTCGGCAG                         GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: gi|211304267|gb|FL115004.1|FL115004
EST:     AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG                         GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: gi|148996413|gb|EE035708.2|EE035708
EST:     AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG                         GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: gi|211195879|gb|FL114997.1|FL114997
EST:     AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG                         GGTGTGTTCAAGCAGTTTGTCTACGGGAATTCTGATAATGCGTTTACAGAT
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: gi|211304269|gb|FL115006.1|FL115006
EST:     AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG                         GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: gi|74236878|gb|DT644792.1|DT644792
EST:     AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG                         GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: gi|211195882|gb|FL115000.1|FL115000
EST:     AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG                         GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: gi|211195881|gb|FL114999.1|FL114999
EST:     AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG                         GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: gi|76283090|gb|DV022658.1|DV022658
EST:     AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG                         GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: gi|76927135|gb|DV171161.1|DV171161
EST:     AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG                         GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: gi|211304266|gb|FL115003.1|FL115003
EST:     AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG                         GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: gi|37424980|gb|CF650224.1|CF650224
EST:     AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG                         GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: gi|148981761|gb|EE027867.2|EE027867
EST:     AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG                         GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: gi|211304268|gb|FL115005.1|FL115005
EST:     AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG                         GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: gi|33466753|gb|CF243802.1|CF243802
EST:     AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG                         GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
EST: gi|211195884|gb|FL115002.1|FL115002
EST:     AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAG                         GGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT
genomic: AGGCGCTGTGGAAGCAGGCCTCCAGGCTCAAGGACCAGGTCTCTCGGCAGgtcagtcgcg ... accactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttttaactcgttacaagtaatataactttatatttaacgacaccactgcagGGTGTGTTCAAGCAGTTTGGCTACGGGAATTCTGATAATGCGTTTACAGATGAGTCAGAGGTTAAACTGCATCAGAGATTGGAAAAGCTTTACTTATCGA
              ttacaagtaatataac  TA-rich tract