1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaatcgtcaatggcaccttgacaaaacattttcttatcctccaggttcctttattcatgtttactaatcattcctgttttggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAATTGGAAGAAGAA
species | Zea mays |
transcript | GRMZM2G104166_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTG GTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAAEST: gi|5847057|gb|AW000136.1|AW000136
genomic: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtca ... tggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
EST: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTG GTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAAEST: gi|6095746|gb|AW120413.1|AW120413
genomic: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtca ... tggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
EST: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTG GTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGAATACTTGACAAEST: gi|211163114|gb|FL067003.1|FL067003
genomic: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtca ... tggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAG-ATACTTGACAA
EST: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTG GTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAAEST: gi|5915494|gb|AW053135.1|AW053135
genomic: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtca ... tggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
EST: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTG GTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAAEST: gi|5895761|gb|AW037007.1|AW037007
genomic: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtca ... tggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
EST: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTG GTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAAEST: gi|211163116|gb|FL067005.1|FL067005
genomic: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtca ... tggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
EST: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTG GTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
genomic: CTGTTGAGGCTCAGCAGCAACGGTTGACCTTACAGCGTCTCATTGCACTGgtaatcgtca ... tggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAA
tatcctccaggttcctttattcatgtttactaatcattcctgttttggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAATTGGAAGAAGAA
tactaat putative branch site (score: 1)
ttcctgtttt putative PPT
tttattcatgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcgtcaatggcaccttgacaaaacattttcttatcctccaggttcctttattcatgtttactaatcattcctgttttggctttaagGTTGAGGCTGAGAGAACTTACCATCAGAGAGTTCTGGAGATACTTGACAAATTGGAAGAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG