Sequence
atgc intronic sequence ATGC exonic sequence...ctatgtatatatgcatggtgatcagccttctatgtaaatttcgtactgcatcaaatgtgtatcttctcagtttatcagcgctttgtttcttgatgtgcagGATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTCATGACTATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G104147_T03 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os11g09140.2 (Oryza sativa), 3'ss of exon 7
ctatgtatatatgcatggtgat-cagccttctatgtaaatttcgtactgcatcaaatgtgtatcttctcagtttatcagcgctttgtttcttgatgtgcagGATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTCATGACTATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGA
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cttaattttctttcacaatgttgctgtcttcaagaaacaattgatgccttatggaaagtttatttcctcaatttgtgatagcatagtttatt-acgtgcagGATTGGGATCGACAAAATCCAACACAAATTGTCACGGAGCTGTGTGGTTTTGTGACCATCCTTTCTGGGACATTTCTCCTCCACAAGACAAAGGACATGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|101391081|gb|EB817474.1|EB817474EST: ACGTGATGTTTACATCACTAACAATTATAGCTAGTGTGATAATGTTCAAG GATTGGGGAC-ATCAAAATCCAACACAAATTTGT-ACAGAGATGTGTGGCT
genomic: ACGTGATGTTTACATCACTAACAATTATAGCTAGTGTGATAATGTTCAAGgtaacccatt ... tgatgtgcagGATTGGG-ACCATCAAAATCCAACACAAATT-GTTACAGAGATGTGTGGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgcatcaaatgtgtatcttctcagtttatcagcgctttgtttcttgatgtgcagGATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTCATGACTATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGA
tcttgat putative branch site (score: 4)
ctttgtttctt CT-rich tract
agtttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctatgtatatatgcatggtgatcagccttctatgtaaatttcgtactgcatcaaatgtgtatcttctcagtttatcagcgctttgtttcttgatgtgcagGATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTCATGACTATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGA
-tatgtat
- - - - - -tgcatgg
- - - - - - - - - - - - - - - - - - - - - gtactgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtatc