1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgaggacctagcgattctgcattttgctcgttgctgctgcttctgggatttgagtaggtcaggggtaatgctgatctgttgtcgtcgtagagccaactgcaagcaagcatagcctgattagaaaatattggtgatttacgtgtatttgtttgtgtttggtgaaacttaatcacctgttcagCATTGAGGGCGCAGTTCTTGATAGAGTGTTTAGGAGACCTGAAGCAGAGCCTGAGGAAAAAGGGCCTCGATTTGCTAGTCCGGCATGGCAAGCCTGAAGA
species | Zea mays |
transcript | GRMZM2G103897_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGGGTCTTTGCGGGGAGCACGCATTACTTTGGGTTCCCCAAGAAGGGAG CATTGAGGGCGCAGTTCTTGATAGAGTGTTTAGGAGACCTGAAGCAGAGCCEST: gi|149098361|gb|EE184336.2|EE184336
genomic: GCGGGTCTTTGCGGGGAGCACGCATTACTTTGGGTTCCCCAAGAAGGGAGgtgaggacct ... acctgttcagCATTGAGGGCGCAGTTCTTGATAGAGTGTTTAGGAGACCTGAAGCAGAGCC
EST: GCGGGTCTTTGCGGGGAGCACGCATTACTTTGGGTTCCCCAAGAAGGGAG CATTGAGGGCGCAGTTCTTGATAGAGTGTTTAGGAGACCTGAAGCAGAGCCEST: gi|76283831|gb|DV023399.1|DV023399
genomic: GCGGGTCTTTGCGGGGAGCACGCATTACTTTGGGTTCCCCAAGAAGGGAGgtgaggacct ... acctgttcagCATTGAGGGCGCAGTTCTTGATAGAGTGTTTAGGAGACCTGAAGCAGAGCC
EST: GCGGGTCTTTGCGGGGAGCACGCATTACTTTGGGTTCCCCAAGAAGGGAG CATTGAGGGCGCAGTTCTTGATAGAGTGTTTAGGAGACCTGAAGCAGAGCCEST: gi|13150051|gb|BG320373.1|BG320373
genomic: GCGGGTCTTTGCGGGGAGCACGCATTACTTTGGGTTCCCCAAGAAGGGAGgtgaggacct ... acctgttcagCATTGAGGGCGCAGTTCTTGATAGAGTGTTTAGGAGACCTGAAGCAGAGCC
EST: GCGGGTCTTTGCGGGGAGCACGCATTACTTTGGGTTCCCCAAGAAGGGAG CATTGAGGGCGCAGTTCTTGATAGAGTGTTTAGGAGACCTGAAGCAGAGCC
genomic: GCGGGTCTTTGCGGGGAGCACGCATTACTTTGGGTTCCCCAAGAAGGGAGgtgaggacct ... acctgttcagCATTGAGGGCGCAGTTCTTGATAGAGTGTTTAGGAGACCTGAAGCAGAGCC
attggtgatttacgtgtatttgtttgtgtttggtgaaacttaatcacctgttcagCATTGAGGGCGCAGTTCTTGATAGAGTGTTTAGGAGACCTGAAGCAGAGCCTGAGGAAAAAGGGCCTCGATTTGCTAGTCCGGCATGGCAAGCCTGAAGA
acttaat putative branch site (score: 4)
cctgttc putative PPT
tatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggacctagcgattctgcattttgctcgttgctgctgcttctgggatttgagtaggtcaggggtaatgctgatctgttgtcgtcgtagagccaactgcaagcaagcatagcctgattagaaaatattggtgatttacgtgtatttgtttgtgtttggtgaaacttaatcacctgttcagCATTGAGGGCGCAGTTCTTGATAGAGTGTTTAGGAGACCTGAAGCAGAGCCTGAGGAAAAAGGGCCTCGATTTGCTAGTCCGGCATGGCAAGCCTGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA