1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaggttttccctatttcaatatttttgtattgctctatgcatctatggatcacttttgttgcttatccattatttccatttatcccatattcaacattcattgtggcagAGGGGAACAGAAGATGTTATGTATTATTTGTCAAAAGAAGCCCATGATGGAAGAGTGAGGAGTGTTCTCTTTCTCATGCCTTGTCATTCAACACCTTACT
species | Zea mays |
transcript | GRMZM2G103473_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGTCATAACCAATGTTCCCATGGCTTTATATATGTCCTTATTCCATCAA AGGGGAACAGAAGACGTTATGTATTATTTGTCAAAAGAAGCCTATGATGGAEST: gi|45567981|gb|CK985842.1|CK985842
genomic: TCGTCATAACCAATGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggttttc ... attgtggcagAGGGGAACAGAAGATGTTATGTATTATTTGTCAAAAGAAGCCCATGATGGA
EST: TCGTCATAACCAATGTTCCCATGGCTTTATATATGTCCTTATTCCATCAA AGGGGAACAGAAGACGTTATGTATTATTTGTCAAAAGAAGCCTATGATGGAEST: gi|71761777|gb|DR959714.1|DR959714
genomic: TCGTCATAACCAATGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggttttc ... attgtggcagAGGGGAACAGAAGATGTTATGTATTATTTGTCAAAAGAAGCCCATGATGGA
EST: TCGTCATAACCAATGTTCCCATGGCTTTATATATGTCCTTATTCCATCAA AGGGGAACAGAAGACGTTATGTATTATTTGTCAAAAGAAGCCTATGATGGA
genomic: TCGTCATAACCAATGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggttttc ... attgtggcagAGGGGAACAGAAGATGTTATGTATTATTTGTCAAAAGAAGCCCATGATGGA
tttgttgcttatccattatttccatttatcccatattcaacattcattgtggcagAGGGGAACAGAAGATGTTATGTATTATTTGTCAAAAGAAGCCCATGATGGAAGAGTGAGGAGTGTTCTCTTTCTCATGCCTTGTCATTCAACACCTTACT
attatttccatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggttttccctatttcaatatttttgtattgctctatgcatctatggatcacttttgttgcttatccattatttccatttatcccatattcaacattcattgtggcagAGGGGAACAGAAGATGTTATGTATTATTTGTCAAAAGAAGCCCATGATGGAAGAGTGAGGAGTGTTCTCTTTCTCATGCCTTGTCATTCAACACCTTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG