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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagccctgggcggcgctcccggttccggctgagtttcttggtttcttgggatggcgtggtgggttttccttttctttcttgtttcgcgcgcgattgatggttcggttccgtgttgcagCCGCGGCGCTGGCGAATCTCTACACCTCCTGGAACAGCCCGTCGCAGCTGGCTGGGTGGTCGGCCAGCGGCGGCGATCCCTGCGGCGCGGCGTGGCAGGG

Basic information

species Zea mays
transcript GRMZM2G103070_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G103070_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g09740.1 (Oryza sativa), 3'ss of exon 1
gtaagagccctgggcggcgctcccggttccggctgagtttcttggtttcttgggatggcgtggtgggttttccttttctttcttgtttcgcgcgcgattgatggttcggttccgtgttgcagCCGCGGCGCTGGCGAATCTCTACACCTCCTGGAACAGCCCGTCGCAGCTGGCTGGGTGGTCGGCCAGCGGCGGCG---ATCCCTGCGGCGCGGCGTGGCAGGG
          || || |||  ||  | | |   || | ||||||||||  | |||  |    |    | ||  |||||||| |  |||           ||||||| || |   ||||||||| |||||||| | |||||| ||  | || |||||||||||||||||||||||||||||||||||| |||||||||   | || |||||||||| ||||||   
---------gtgagctgcggcccacgattca--tggggttcttggttttcttggaatgttcaggaaatcttg-ttttctttttccttt-----------gatggttggggtgt-tgttgcagCTGCGGCGCTTGGGAATCTGTATTCGTCGTGGAACAGCCCGTCGCAGCTGGCTGGGTGGTCGGCCGGCGGCGGCGGCGACCCTTGCGGCGCGGGGTGGCA---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148960881|gb|EE011562.2|EE011562
EST:     CCTTGCCCTCGCGGCGGCGCCAGCGGGAGCCGAAACCGACCCCGACGACG                         CCGCGGCGCTGGCGAATCTCTACACCTCCTGGAACAGCCCGTCGCAGCTGG
genomic: CCTTGCCCTCGCGGCGGCGCCAGCGGGAGCCGAAACCGACCCCGACGACGgtaagagccc ... cgtgttgcagCCGCGGCGCTGGCGAATCTCTACACCTCCTGGAACAGCCCGTCGCAGCTGG
EST: gi|71433498|gb|DR814548.1|DR814548
EST:     CCTTGCCCTCGCGGCGGCGCCAGCGGGAGCCGAAACCGACCCCGACGACG                         CCGCGGCGCTGGCGAATCTCTACACCTCCTGGAACAGCCCGTCGCAGCTGG
genomic: CCTTGCCCTCGCGGCGGCGCCAGCGGGAGCCGAAACCGACCCCGACGACGgtaagagccc ... cgtgttgcagCCGCGGCGCTGGCGAATCTCTACACCTCCTGGAACAGCCCGTCGCAGCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttccttttctttcttgtttcgcgcgcgattgatggttcggttccgtgttgcagCCGCGGCGCTGGCGAATCTCTACACCTCCTGGAACAGCCCGTCGCAGCTGGCTGGGTGGTCGGCCAGCGGCGGCGATCCCTGCGGCGCGGCGTGGCAGGG
                            gattgat  putative branch site (score: 4)
      ttttcttt  TA-rich tract