1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgtaaattctgtcactttcagttagtttcctgagaagcactcgatgatcaacgataccagtaaatgatacaactttctataatgtccctatgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCGTTGGAAGTGCCATTGCTTTGTTTATGTGGATCACCGGTATCCTTAAAA
species | Zea mays |
transcript | GRMZM2G103047_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|211274928|gb|FL373271.1|FL373271
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|71427134|gb|DR808184.1|DR808184
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|211040276|gb|FL427900.1|FL427900
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|60349997|gb|DN216970.1|DN216970
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: CTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|21760182|gb|BQ635723.1|BQ635723
genomic: CTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|78125801|gb|DV544185.1|DV544185
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|76916104|gb|DV166241.1|DV166241
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|211501651|gb|FL380183.1|FL380183
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|211254579|gb|FL410492.1|FL410492
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: CGGGCTCTGGTACCTCTTCAACATCTACTTNCA-CATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|211303195|gb|FL395154.1|FL395154
genomic: CGGGCTCTGGTACCTCTTCAACATCTACTT-CAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACEST: gi|74235578|gb|DT643492.1|DT643492
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAAC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACTACAGTGCAGTTTGCCEST: gi|211047986|gb|FL382472.1|FL382472
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|211330230|gb|FL404919.1|FL404919
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|211020375|gb|FL416545.1|FL416545
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGEST: gi|50331502|gb|CO526628.1|CO526628
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTG
EST: TCGGGCTCTGGTACCTCTTCAAC--CTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|78082339|gb|DV510751.1|DV510751
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|149105847|gb|EE291446.2|EE291446
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|149072472|gb|EE160748.2|EE160748
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|211325790|gb|FL398339.1|FL398339
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCAEST: gi|76018097|gb|DT945267.1|DT945267
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCA
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|149070713|gb|EE159128.2|EE159128
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|71444331|gb|DR825381.1|DR825381
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|211069261|gb|FL419934.1|FL419934
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|149094831|gb|EE180400.2|EE180400
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|211476303|gb|FL383240.1|FL383240
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|78078232|gb|DV506647.1|DV506647
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|26457500|gb|CA829083.1|CA829083
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|31358649|gb|CD443006.1|CD443006
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|78121642|gb|DV540026.1|DV540026
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|50334494|gb|CO529620.1|CO529620
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|149007367|gb|EE040217.2|EE040217
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|211071293|gb|FL399387.1|FL399387
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCEST: gi|211063599|gb|FL411764.1|FL411764
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
EST: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAG GTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
genomic: TCGGGCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAGCAGgtgaactgac ... tgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCC
gatcaacgataccagtaaatgatacaactttctataatgtccctatgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCGTTGGAAGTGCCATTGCTTTGTTTATGTGGATCACCGGTATCCTTAAAA
tccctat CT-rich tract
tttctataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtaaattctgtcactttcagttagtttcctgagaagcactcgatgatcaacgataccagtaaatgatacaactttctataatgtccctatgctctgcagGTTCTGAAGGTTCTGCCATACCCTATAAACATCACCACAGTGCAGTTTGCCGTTGGAAGTGCCATTGCTTTGTTTATGTGGATCACCGGTATCCTTAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - ctgtcac
- - - - - - - - - - - - - - - - -gaagcac