1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatcgatctctcgctccttctgtggcatctgaagttgtgtaatggcgacgaaatagttggcagctagtaaatcgtggatctcgtgttcctgcagCGGATGCTCTGCACGCTGTGTTCCGGCAGTGGAGACTGGAGGGCGGCGCGGCGATGGAGGACCCGTGCAGGAAGGGCGTCTGGTCAGAGTCGTCCGGAAT
species | Zea mays |
transcript | GRMZM2G103033_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCGGCGCAGGGTCAACAGCCGTTCCCGCTGTCCACCGATCCATCCGACG CGGATGCTCTGCACGCTGTGTTCCGGCAGTGGAGACTGGAGGGCGGCGCGGEST: gi|211178693|gb|FL329875.1|FL329875
genomic: CGCGGCGCAGGGTCAACAGCCGTTCCCGCTGTCCACCGATCCATCCGACGgtatcgatct ... gttcctgcagCGGATGCTCTGCACGCTGTGTTCCGGCAGTGGAGACTGGAGGGCGGCGCGG
EST: CGCGGCGCAGGGTCAACAGCCGTTCCCGCTGTCCACCGATCCATCCGACG CGGATGCTCTGCACGCTGTGTTCCGGCAGTGGAGACTGGAGGGCGGCGCGGEST: gi|211265619|gb|FL356060.1|FL356060
genomic: CGCGGCGCAGGGTCAACAGCCGTTCCCGCTGTCCACCGATCCATCCGACGgtatcgatct ... gttcctgcagCGGATGCTCTGCACGCTGTGTTCCGGCAGTGGAGACTGGAGGGCGGCGCGG
EST: CGCGGCGCAGGGTCAACAGCCGTTCCCGCTGTCCACCGATCCATCCGACG CGGATGCTCTGCACGCTGTGTTCCGGCAGTGGAGACTGGAGGGCGGCGCGGEST: gi|211413975|gb|FL312351.1|FL312351
genomic: CGCGGCGCAGGGTCAACAGCCGTTCCCGCTGTCCACCGATCCATCCGACGgtatcgatct ... gttcctgcagCGGATGCTCTGCACGCTGTGTTCCGGCAGTGGAGACTGGAGGGCGGCGCGG
EST: CGCGGCGCAGGGTCAACAGCCGTTCCCGCTGTCCACCGATCCATCCGACG CGGATGCTCTGCACGCTGTGTTCCGGCAGTGGAGACTGGAGGGCGGCGCGG
genomic: CGCGGCGCAGGGTCAACAGCCGTTCCCGCTGTCCACCGATCCATCCGACGgtatcgatct ... gttcctgcagCGGATGCTCTGCACGCTGTGTTCCGGCAGTGGAGACTGGAGGGCGGCGCGG
taatggcgacgaaatagttggcagctagtaaatcgtggatctcgtgttcctgcagCGGATGCTCTGCACGCTGTGTTCCGGCAGTGGAGACTGGAGGGCGGCGCGGCGATGGAGGACCCGTGCAGGAAGGGCGTCTGGTCAGAGTCGTCCGGAAT
tgttcct CT-rich tract
aaatagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcgatctctcgctccttctgtggcatctgaagttgtgtaatggcgacgaaatagttggcagctagtaaatcgtggatctcgtgttcctgcagCGGATGCTCTGCACGCTGTGTTCCGGCAGTGGAGACTGGAGGGCGGCGCGGCGATGGAGGACCCGTGCAGGAAGGGCGTCTGGTCAGAGTCGTCCGGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA