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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccagtgtgattcgatcatacgcgcgttacgctacgttacggctgcagcaagtgtttttgttcacccgcccgtctctttgttgaaattgtcgcgtggctagGTTTCACGTGCTGTCGGAGTTCGACGAGGTCAAGAGGAGCTGCCGGAAACGGCTGGCCGAGCACAACCGCCGCCGCCGGAAGCCGCCCACCACCGCCTCA

Basic information

species Zea mays
transcript GRMZM2G101499_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101499_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os06g44860.1 (Oryza sativa), 3'ss of exon 1
ccagtgtgattcg-atcatacgcgcgttacgctacgttacggctgcagcaagtgtttttgttcacccgcccgtctctttgttgaaattgtcgcg-----tggctagGTTTCACGTGCTGTCGGAGTTCGACGAGGTCAAGAGGAGCTGCCGGAAACGGCTGGCCGAGCACAACCGCCGCCGCCGGAAGCCGCCCACCACCGCCTCA
      | ||||| ||  |   |    ||   || |||  |  ||  | |   |||||  |  ||      ||  | |||| |   |     |      ||| |||||||||||||||  ||||||| || |||| |||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||| |  |  | ||  | 
----cattattcgtatagtgtactacgtatagtatgttgtg--tgatgtacacgttttaatctacagaattgtgacattgtgggtgtacgtacatgtgttggatagGTTTCACGTGCTCACGGAGTTTGATGAGGCCAAGAGGAGCTGCCGGAAGCGGCTGGCGGAGCACAACCGTCGCCGGCGGAAGCCGGCGGCGGCGGCGACG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcaagtgtttttgttcacccgcccgtctctttgttgaaattgtcgcgtggctagGTTTCACGTGCTGTCGGAGTTCGACGAGGTCAAGAGGAGCTGCCGGAAACGGCTGGCCGAGCACAACCGCCGCCGCCGGAAGCCGCCCACCACCGCCTCA
        tttttgtt  TA-rich tract