Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctcttactattggcttcaaatggatttctttcctgctatgtttttctttgttatatagttccttttctctgattctgctcgatctgtcattatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC

Basic information

species Zea mays
transcript GRMZM2G101480_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101480_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g27850.1 (Oryza sativa), 3'ss of exon 1
gctcttactattggcttcaaatggatttctttcctgctatgtttttctttgttatatagttcctttt--ctctgattctgctcgatctgtcattatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC
| | ||     |    |   ||  || | ||            ||  ||| || |    |||  ||      |||||||    | |   ||  |||   |||  |||||||| |  ||||||||||||||||| ||||||||||||||||||||||| || || |||||||| |||| ||| ||||
gattttgagggttttgttcgatctatatgttgttcaaagatccttcttttattctggtcttcgcttaaatattgattctttctgtttgatc--tatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCAAGCGGCTGGATGACGACACCGAGAGCCTTGCCC

upper sequence: GRMZM2G101480_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g27850.2 (Oryza sativa), 3'ss of exon 1
gctcttactattggcttcaaatggatttctttcctgctatgtttttctttgttatatagttcctttt--ctctgattctgctcgatctgtcattatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC
| | ||     |    |   ||  || | ||            ||  ||| || |    |||  ||      |||||||    | |   ||  |||   |||  |||||||| |  ||||||||||||||||| |||||||||||||||||||||||                             
gattttgagggttttgttcgatctatatgttgttcaaagatccttcttttattctggtcttcgcttaaatattgattctttctgtttgatc--tatgcacagATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCAAGCG-----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211102751|gb|FL409166.1|FL409166
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|71595755|gb|DR906506.1|DR906506
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|31558212|gb|CD527424.1|CD527424
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|31362533|gb|CD446890.1|CD446890
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|211150712|gb|FL424943.1|FL424943
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|211199840|gb|FL414699.1|FL414699
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|148943030|gb|EC888080.2|EC888080
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|18176992|gb|BM378202.1|BM378202
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|13198703|gb|BG354505.1|BG354505
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|113701846|gb|EE679350.1|EE679350
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|60356188|gb|DN223161.1|DN223161
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|148938265|gb|EC882560.2|EC882560
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|74237600|gb|DT645514.1|DT645514
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         TCAACGCTGGTATGA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGA
EST: gi|60340588|gb|DN207561.1|DN207561
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|71306599|gb|DR789460.1|DR789460
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|78025685|gb|DV494072.1|DV494072
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|67010822|gb|CO439571.1|CO439571
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|211169505|gb|FL157588.1|FL157588
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|78025602|gb|DV493989.1|DV493989
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|67024898|gb|CO453647.1|CO453647
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|60338996|gb|DN205969.1|DN205969
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|60349014|gb|DN215987.1|DN215987
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|60350229|gb|DN217202.1|DN217202
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|71431138|gb|DR812188.1|DR812188
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|67019598|gb|CO448347.1|CO448347
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|51592532|gb|CV071678.1|CV071678
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCCCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|211297066|gb|FL414882.1|FL414882
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|8577422|gb|BE130059.1|BE130059
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|60358790|gb|DN225763.1|DN225763
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|71306597|gb|DR789459.1|DR789459
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|76909113|gb|DV163229.1|DV163229
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         TCAACGCTGGTATGAAACA-GGCGGCGTCCAG
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAA-CAAGGCGGCGTCCAG
EST: gi|67021700|gb|CO450449.1|CO450449
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|211169503|gb|FL157586.1|FL157586
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|74035245|gb|DT535734.1|DT535734
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|21760114|gb|BQ635655.1|BQ635655
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|211171174|gb|FL157590.1|FL157590
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|211508672|gb|FL378338.1|FL378338
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|12971089|gb|BG267309.1|BG267309
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|5108299|gb|AI740012.1|AI740012
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|91868112|gb|EB399922.1|EB399922
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|13558840|gb|BG550195.1|BG550195
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|211134616|gb|FL369498.1|FL369498
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|31349676|gb|CD434033.1|CD434033
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|211221428|gb|FL386095.1|FL386095
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|211089795|gb|FL379373.1|FL379373
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|60342198|gb|DN209171.1|DN209171
EST:     CGTCAACGCCGCGTGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|211169506|gb|FL157589.1|FL157589
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|32915336|gb|CF020148.1|CF020148
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|9952825|gb|BE639408.1|BE639408
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|31250133|gb|CD219157.1|CD219157
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|211426583|gb|FL408876.1|FL408876
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|60340907|gb|DN207880.1|DN207880
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|37393065|gb|CF633789.1|CF633789
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|14701255|gb|BI233673.1|BI233673
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|76021145|gb|DT948315.1|DT948315
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|67014211|gb|CO442960.1|CO442960
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|18179932|gb|BM381142.1|BM381142
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|67012987|gb|CO441736.1|CO441736
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|211089947|gb|FL388097.1|FL388097
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|211171178|gb|FL157594.1|FL157594
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|67030264|gb|CO459013.1|CO459013
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|211365691|gb|FL375168.1|FL375168
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|18180789|gb|BM381999.1|BM381999
EST:     GGCGCGGAGATCGAGACCATGAAGAAGT                         TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: GGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|60343038|gb|DN210011.1|DN210011
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|31558213|gb|CD527425.1|CD527425
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|51592547|gb|CV071693.1|CV071693
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCCCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|30087745|gb|CB885951.1|CB885951
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|211171182|gb|FL157598.1|FL157598
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|76021146|gb|DT948316.1|DT948316
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
EST: gi|14203457|gb|BG837134.1|BG837134
EST:     CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGT                         ACAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA
genomic: CGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 2 RNA-Seq libraries.


Block sizes: 8 (upstream exon), 42 (downstream exon)
Score: 1

GTTGTGCGGAAGAAGGCACCCACCGCCGCTGCCAAGAAGGATGAGAAGGCCGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC


Block sizes: 45 (upstream exon), 22 (downstream exon)
Score: 9

GTTGTGCGGAAGAAGGCACCCACCGCCGCTGCCAAGAAGGATGAGAAGGCCGTCAACGCCGCGCGCCGCTCCGGCGCGGAGATCGAGACCATGAAGAAGTgtaagtggtt ... ttatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttgttatatagttccttttctctgattctgctcgatctgtcattatctgcagTCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC
                      ctctgat  putative branch site (score: 9)
      ttatatagtt  TA-rich tract