ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

...cacactgtttttgtttgatttttgtatcgtaattatatactgtaaattgtaattattgtttgagcactgcttctgattcgtttctcccctaattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACTGTTGCTGACATGATCAAGGGCAAGACACCAGAAGAGATTCGCAAGACCT

Basic information

species	Zea mays
transcript	GRMZM2G101446_T01
intron #	1
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G101446_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os11g26910.1 (Oryza sativa), 3'ss of exon 1

--cacactgtttttgtttgatttttgtatcgtaattatatactgtaa--attgtaattattg-tttgagcactgcttctgattcgtttctcccctaattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACTGTTGCTGACATGATCAAGGGCAAGACACCAGAAGAGATTCGCAAGACCT
   ||  ||| ||  |||  |   || ||  | ||  | | || ||   || || |||| || ||     ||    | | ||| | |||||    |||   | |||| || ||||| || |||||||||||  |||| ||||| || || |||||||||||||||||||||||||| ||||| || || ||||| ||||||||||
tgaactatgtattccttttgtggctgaatgttgatc-tgtgctttagccatagtgattactgcttcttataccatgttt-atttgattctca---aatcccacagGCCGCGAACTACCTCAACATCAAGGGGTTGCTGGACCTTACTTGCCAGACTGTTGCTGACATGATCAAGGGGAAGACTCCTGAGGAGATCCGCAAGACCT

upper sequence: GRMZM2G101446_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA11G08440.1 (Glycine max), 3'ss of exon 1

cacactgtttttgtttgatttttgtatcgtaat-tatatactgtaaattgtaattattgtttgagcactgcttctgattcgtttctcccctaattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACTGTTGCTGACATGATCAAGGGCAAGACACCAGAAGAGATTCGCAAGACCT
 |   |  | |||||||    ||| |  |  |  || |  ||||  |||       ||   |  | |||  | |  |||  | |  |   |   ||| |||||||| |||||  ||||||||||| | ||||| ||||| || ||||| ||||| || |||||||||||||| ||||| ||||| || |||||||||||||
-atgtttgtattgtttgtgcattgcaatgccacataaactctgtttatttagtaggttaagtctgtactaatacatattaatgtgacaattttctttttagGCTGCTAACTACTTGAACATCAAGAGCCTGCTGGACCTTACATGTCAAACTGTAGCCGACATGATCAAGGGGAAGACTCCAGAGGAAATTCGCAAGACCT

upper sequence: GRMZM2G101446_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA16G23230.1 (Glycine max), 3'ss of exon 1

cacactgtttttgtttgatttttgtatcgtaattatatactgtaaattgtaa--ttattgtttga-gcactgcttctgattcgtttctcccctaattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACTGTTGCTGACATGATCAAGGGCAAGACACCAGAAGAGATTCGCAAGACCT
   ||  || | |  |  | | ||    ||  ||  ||| | | |||  ||   ||| | |||          ||   | || ||||     |   | || |||||||||||||  ||||||||||| | ||  | ||||| || || ||||| || || |||||||||||||| ||||| || || || ||||||||||| |
-taaccattgtagacttttgtctgc-ctgtgtttgcatatttttaatcttaggtttactctttattatgtcaattaacactc-tttcaaaatttcctatacagGCTGCAAACTACTTGAACATCAAGAGCCTTTTGGACCTTACTTGCCAGACAGTAGCAGACATGATCAAGGGAAAGACTCCTGAGGAAATTCGCAAGACAT

upper sequence: GRMZM2G101446_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA01G36850.2 (Glycine max), 3'ss of exon 1

cacactgtttttgtttgatttttgtatcgtaat-tatatactgtaaattgtaattattgtttgagcactgcttctgattcgtttctcccctaattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACTGTTGCTGACATGATCAAGGGCAAGACACCAGAAGAGATTCGCAAGACCT
||   |    || | ||     || |  |  |  ||||  |||| ||||   |   ||   |  | |||  | |   ||  | |  |   |    || |||||||| |||||  ||||||||||| | ||||| ||||| || || || ||||| || |||||||||||||| ||||| || || || |||||||||||||
catggttggattatctgggcaatggaatgccacatatactctgttaattagtag-gttaaatctgtactaatgcatgttaatgtgacaattttccttttagGCTGCGAACTACTTGAACATCAAGAGCCTGCTGGACCTTACATGCCAAACTGTAGCCGACATGATCAAGGGGAAGACTCCCGAGGAAATTCGCAAGACCT

upper sequence: GRMZM2G101446_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv03s0038g02500.t01 (Vitis vinifera), 3'ss of exon 1

-cacactgttt--ttgtttgatttttgtatc-gtaattatatactgtaaattgtaattattgtttgagcactgcttctgattcgtttctcccctaattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACTGTTGCTGACATGATCAAGGGCAAGACACCAGAAGAGATTCGCAAGACCT
  |  || ||   |  |||| |  || |  |   || | | |  |||   ||||  || | || |    |    | ||    || |||| ||    | ||  |||| |||||||||||  | |||||| | ||| | ||  ||||||| || || |||||||||||||||||||| ||||| || || || ||||||||||| |
atatcctattcgctaatttggtgattttccctagaactttttcttgtgccttgtgtttctcgtgtatcaatcaatcct---ccggttcttccg-gttcttgcagGCAGCAAACTATCTAGATATCAAGAGCCTGTTGGATTTGACCTGCCAAACAGTTGCTGACATGATCAAGGGAAAGACTCCGGAGGAAATTCGCAAGACAT

upper sequence: GRMZM2G101446_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv03s0038g02490.t01 (Vitis vinifera), 3'ss of exon 3

cacactgtttttgtttgattt--ttgtatcgtaattatatactgtaaattgtaattattgtttgagcactgcttctgattcgttt--ctcccctaattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACTGTTGCTGACATGATCAAGGGCAAGACACCAGAAGAGATTCGCAAGACCT
 |  || |   | |   ||||  |  | | || ||| |   |   || || |  || |   ||| |   | ||| ||  ||  |    ||  |   | ||  |||| ||| | |||||  | |||||| | |||   ||  ||||||| || ||||||||||||||||| ||||| |||||  | || || |||||||||||  
-aagctttgaatatcctatttgctaatttggtgatt-ttcccaagaactttttcttgtgccttgtgt--ttcttgtgtatcaatcaattcttcggttcttgcagGCAGCAGATTATCTAGATATCAAGAGCCTGTCGGATTTGACCTGCCAAACTGTTGCTGACATGATGAAGGGAAAGACTGCGGAGGAAATTCGCAAGACAC

upper sequence: GRMZM2G101446_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv18s0001g14860.t01 (Vitis vinifera), 3'ss of exon 2

--cacactgtttttgtttgatttttgtatc-gtaattatatactgtaaattgtaattattgtttgagcactgcttctgattcgtttctcccctaattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACTGTTGCTGACATGATCAAGGGCAAGACACCAGAAGAGATTCGCAAGACCT
  ||    |      |||   | |  ||||  |  | ||||||    |     ||  |||    | |   ||    | ||| || | |    | |||||  |||| ||||||||||||||||||||| |||| || || || || ||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||| || |
gtcatggcgaacaattttagatatcatatctattttgatataccagtagaaagaaaaatttacagtggtttgaca-taatttgtgtgtatt-tgatttt-cagGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACTGTGGCTGACATGATAAAGGGCAAGACTCCAGAGGAGATTCGCAAAACTT

upper sequence: GRMZM2G101446_T01 (Zea mays), 3'ss of exon 1
lower sequence: EDP05410 (Chlamydomonas reinhardtii), 3'ss of exon 1

-----------------------cacactgttt--ttgtttgatttttgtatc---gtaattatatactgtaaattgtaattattgtttgagca-ctgcttctgattcgtttctccccta-attttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACTGTTGCTGACATGATCAAGGGCAAGACACCAGAAGAGATTCGCAAGACCT
                       |||   |||   | |  ||    ||  | |   |     ||   |  |   |    |||          |  ||    |  || | |    | |  |      | ||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||| ||| | ||||| ||||| || || ||||| ||||| |||||||| |
gtaagcgcgcgagaaatttggagcacctcgttcgctcgcatggcccttagagccgcgcccccatcggccatggctatgcattgcgagcgagacgtctaacgcgcatgcatgcggctctcacgcaacacagGCTGCGAACTACCTGAACATCAAGGGTCTGCTGGACCTGACCTGCCAGACTGTGGCTCAGATGATTAAGGGGAAAACGCCAGAGGAGATCCGCAAGACGT

upper sequence: GRMZM2G101446_T01 (Zea mays), 3'ss of exon 1
lower sequence: EFJ22022 (Selaginella moellendorffii), 3'ss of exon 1

------------cacactgttt-ttgtttgatttttgtatcgtaattatatactgtaaattgtaattattgtttgagcactgcttctgattcgtttctcccctaattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACTGTTGCTGACATGATCAAGGGCAAGACACCAGAAGAGATTCGCAAGACCT
            |   |  ||| ||      ||||| | |||   || |    |      |  |  | | |  |||  |  | ||  | |    |  |       | ||  |||| || |||||||| ||||||  |    |||| || ||||| || || || || || |||||||||||||||||||| || || ||||| |||||||| |
gtaggatttcttcgttcgatttcttcccccctttttctctcgcttttctcgttttgggtcttgagctttcgactgacaatcgatttgggtgatctggttttgcgttgttccagGCCGCGAACTATCTCAACATCCGGAACTTGCTGGATCTGACGTGCCAAACCGTGGCGGACATGATCAAGGGCAAGACCCCGGAGGAGATCCGCAAGACTT

upper sequence: GRMZM2G101446_T01 (Zea mays), 3'ss of exon 1
lower sequence: EFJ18284 (Selaginella moellendorffii), 3'ss of exon 1

-cacactgtttttgtttgatttttgtatcgtaattatatactgtaaattgtaattattgtttgagcactgcttctgattcgtttctcccctaattt--tatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACTGTTGCTGACATGATCAAGGGCAAGACACCAGAAGAGATTCGCAAGACCT
  |   | | || ||| ||||| | |  |    || | |   |    |     ||   || |      | |  ||||        |    | ||||  |  |||| || |||||||| ||||||  |    |||| || ||||| || || || || || |||||||||||||||||||| || || ||||| |||||||| |
gtaggatttcttcgttcgatttct-tcccccctttttctctcgcttttctcgttttgggtcttgagctttcgactgacaatcgatttgggtgatttgttccagGCCGCGAACTATCTCAACATCCGGAACTTGCTGGATCTGACGTGCCAAACCGTGGCGGACATGATCAAGGGCAAGACCCCGGAGGAGATCCGCAAGACTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|211515689|gb|FL030367.1|FL030367

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211366163|gb|FL057009.1|FL057009

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAA-CTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211515687|gb|FL030365.1|FL030365

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211048405|gb|FL056751.1|FL056751

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|13388575|gb|BG462233.1|BG462233

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211194492|gb|FL056935.1|FL056935

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211192094|gb|FL056924.1|FL056924

EST:     TGCGGACTTCGTTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTC
genomic: TGCGGACTTCGT-CAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTC

EST: gi|21843288|gb|BQ703869.1|BQ703869

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211518045|gb|FL030375.1|FL030375

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTTCAGAC
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGT-CAGAC

EST: gi|211515686|gb|FL030364.1|FL030364

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAA-CTATCTG
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTG

EST: gi|211515688|gb|FL030366.1|FL030366

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGAACCTGTCAGAC
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGA-CCTGTCAGAC

EST: gi|211518055|gb|FL030385.1|FL030385

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|19822073|gb|BQ048097.1|BQ048097

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211087235|gb|FL030389.1|FL030389

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGAYCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211087233|gb|FL030387.1|FL030387

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211196898|gb|FL056951.1|FL056951

EST:     TGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACC
genomic: TGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTT-CGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACC

EST: gi|5686710|gb|AI939729.1|AI939729

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211518049|gb|FL030379.1|FL030379

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGAACTGACCTGTCAGA
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGA

EST: gi|211196900|gb|FL056953.1|FL056953

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGG
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGG

EST: gi|211366161|gb|FL057007.1|FL057007

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|21088941|gb|BQ401254.1|BQ401254

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211063222|gb|FL056833.1|FL056833

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTG
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTG

EST: gi|211057263|gb|FL056801.1|FL056801

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211194486|gb|FL056929.1|FL056929

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCA
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCA

EST: gi|5901361|gb|AW042461.1|AW042461

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211363509|gb|FL056996.1|FL056996

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211192089|gb|FL056919.1|FL056919

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211368035|gb|FL017676.1|FL017676

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211515692|gb|FL030370.1|FL030370

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAA
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAA

EST: gi|211518050|gb|FL030380.1|FL030380

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211182469|gb|FL056859.1|FL056859

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGA
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGA

EST: gi|22549152|gb|BU101353.1|BU101353

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211057264|gb|FL056802.1|FL056802

EST:     TGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAA
genomic: TGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTT-CGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAA

EST: gi|211518048|gb|FL030378.1|FL030378

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|26455997|gb|CA827580.1|CA827580

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211363506|gb|FL056993.1|FL056993

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211518051|gb|FL030381.1|FL030381

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211371483|gb|FL057043.1|FL057043

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211365385|gb|FL017668.1|FL017668

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCATAGG-TCTGCTCGACCTGACCTGTCAGAC
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCA-AGGGTCTGCTCGACCTGACCTGTCAGAC

EST: gi|211057261|gb|FL056799.1|FL056799

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTA
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTA

EST: gi|211515690|gb|FL030368.1|FL030368

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|22715668|gb|BU197895.1|BU197895

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211515684|gb|FL030362.1|FL030362

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGKCTGCTCGACCTGACCTGTCAGAC
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGAC

EST: gi|211196892|gb|FL056945.1|FL056945

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211189678|gb|FL056899.1|FL056899

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|22819937|gb|BU500027.1|BU500027

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211196899|gb|FL056952.1|FL056952

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211087232|gb|FL030386.1|FL030386

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211518047|gb|FL030377.1|FL030377

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGA
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGA

EST: gi|211518041|gb|FL030371.1|FL030371

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211360844|gb|FL056976.1|FL056976

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211060257|gb|FL056807.1|FL056807

EST:     TGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTG
genomic: TGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTT-CGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTG

EST: gi|161584971|gb|EY955268.1|EY955268

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGT

EST: gi|211518044|gb|FL030374.1|FL030374

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211518054|gb|FL030384.1|FL030384

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211196890|gb|FL056943.1|FL056943

EST:     TGCGGACTTCGTCAAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTNG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: TGCGGACTTCGTCAA-GGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211194491|gb|FL056934.1|FL056934

EST:     TGCGGACTTCGTCAAGGTCGACCAAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCT
genomic: TGCGGACTTCGTCAAGGTCGACCA-GGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCT

EST: gi|211368038|gb|FL017679.1|FL017679

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTA
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTA

EST: gi|211518046|gb|FL030376.1|FL030376

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGAC-TGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211192095|gb|FL056925.1|FL056925

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211358189|gb|FL056968.1|FL056968

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211189680|gb|FL056901.1|FL056901

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211368042|gb|FL017683.1|FL017683

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCT

EST: gi|211057254|gb|FL056792.1|FL056792

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211518042|gb|FL030372.1|FL030372

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211189682|gb|FL056903.1|FL056903

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGGAACATCAAGGGTC
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTG-AACATCAAGGGTC

EST: gi|211518052|gb|FL030382.1|FL030382

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGA
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGA

EST: gi|211518053|gb|FL030383.1|FL030383

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211371482|gb|FL057042.1|FL057042

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211063221|gb|FL056832.1|FL056832

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGAC-TGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

EST: gi|211368033|gb|FL017674.1|FL017674

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATC
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATC

EST: gi|22819869|gb|BU499959.1|BU499959

EST:     ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTG                         GCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT
genomic: ATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACT

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 3 RNA-Seq libraries.

Block sizes: 36 (upstream exon), 47 (downstream exon)
Score: 3

CGCCTCCGCCAACAGCACCGCCGCCTCCGGTGAGGACCTCAAGAACTGGGATGCGGACTTCGTCAAGGTCGACCAGGCCACGCTTTTCGACCTCATCTTGgtaaaggatc ... aattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACTGTTGCTGACATGATCAAGGGCAAGACACCAGAAGAGATTCGCAAGACCT

Block sizes: 24 (upstream exon), 47 (downstream exon)
Score: 3

Block sizes: 24 (upstream exon), 26 (downstream exon)
Score: 1

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

attgtaattattgtttgagcactgcttctgattcgtttctcccctaattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACTGTTGCTGACATGATCAAGGGCAAGACACCAGAAGAGATTCGCAAGACCT

                                         ccctaat  putative branch site (score: 1)
                                   tttctcccctaatttt  CT-rich tract
                                            taattttata  TA-rich tract

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cacactgtttttgtttgatttttgtatcgtaattatatactgtaaattgtaattattgtttgagcactgcttctgattcgtttctcccctaattttatagGCTGCAAACTATCTGAACATCAAGGGTCTGCTCGACCTGACCTGTCAGACTGTTGCTGACATGATCAAGGGCAAGACACCAGAAGAGATTCGCAAGACCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA