1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagaggttcaggcatggacggcggtgctgcttctgctgaattgtcaagtctttgactgacagttgtgtgtcaaaaaaaaaactgaaattggcagGGTGGTGCGAACGGCATGAACAAGAGACCCAGAGGGAAGCAGCAGCCGTCTGGCCTCTCTGAGATCGCGGCGGCGCCCGGGAAAGGGAAGCAGGAGAGGC
species | Zea mays |
transcript | GRMZM2G101350_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCAGCGGCGGGTTGAGGAAGAGGAGGCCGGACGCGTACCTCGATGCCAAG GGTGGTGCGAACGGCATGAACAAGAGACCCAGAGGGAAGCAGCAGCCGTCTEST: gi|211083127|gb|FL084307.1|FL084307
genomic: TCAGCGGCGGGTTGAGGAAGAGGAGGCCGGACGCGTACCTCGATGCCAAGgtgagaggtt ... aaattggcagGGTGGTGCGAACGGCATGAACAAGAGACCCAGAGGGAAGCAGCAGCCGTCT
EST: TCAGCGGCGGGTTGAGGAAGAGGAGGCCGGACGCGTACCTCGATGCCAAG GGTGGTGCGAACGGCATGAACAAGAGACCCAGAGGGAAGCAGCAGCCGTCTEST: gi|211083131|gb|FL084311.1|FL084311
genomic: TCAGCGGCGGGTTGAGGAAGAGGAGGCCGGACGCGTACCTCGATGCCAAGgtgagaggtt ... aaattggcagGGTGGTGCGAACGGCATGAACAAGAGACCCAGAGGGAAGCAGCAGCCGTCT
EST: TCAGCGGCGGGTTGAGGAAGAGGAGGCCGGACGCGTACCTCGATGCCAAG GGTGGTGCGAACGGCATGAACAAGAGACCCAGAGGGAAGCAGCAGCCGGTCEST: gi|211083130|gb|FL084310.1|FL084310
genomic: TCAGCGGCGGGTTGAGGAAGAGGAGGCCGGACGCGTACCTCGATGCCAAGgtgagaggtt ... aaattggcagGGTGGTGCGAACGGCATGAACAAGAGACCCAGAGGGAAGCAGCAGCCG-TC
EST: TCAGCGGCGGGTTGAGGAAGAGGAGGCCGGACGCGTACCTCGATGCCAAG GGTGGTGCGAACGGCATGAACAAGAGACCCAGAGGGAAGCAGCAGCCGTCTEST: gi|211083128|gb|FL084308.1|FL084308
genomic: TCAGCGGCGGGTTGAGGAAGAGGAGGCCGGACGCGTACCTCGATGCCAAGgtgagaggtt ... aaattggcagGGTGGTGCGAACGGCATGAACAAGAGACCCAGAGGGAAGCAGCAGCCGTCT
EST: TCAGCGGCGGGTTGAGGAAGAGGAGGCCGGACGCGTACCTCGATGCCAAG GGTGGTGCGAACGGCATGAACAAGAGACCCAGAGGGAAGCAGCAGCCGTCTEST: gi|86472777|gb|DY239147.1|DY239147
genomic: TCAGCGGCGGGTTGAGGAAGAGGAGGCCGGACGCGTACCTCGATGCCAAGgtgagaggtt ... aaattggcagGGTGGTGCGAACGGCATGAACAAGAGACCCAGAGGGAAGCAGCAGCCGTCT
EST: TCAGCGGCGGGTTGAGGAAGAGGAGGCCGGACGCGTACCTCGATGCCAAG GGTGGTGCGAACGGCATGAACAAGAGACCCAGAGGGAAGCAGCAGCCGTCTEST: gi|211083129|gb|FL084309.1|FL084309
genomic: TCAGCGGCGGGTTGAGGAAGAGGAGGCCGGACGCGTACCTCGATGCCAAGgtgagaggtt ... aaattggcagGGTGGTGCGAACGGCATGAACAAGAGACCCAGAGGGAAGCAGCAGCCGTCT
EST: TCAGCGGCGGGTTGAGGAAGAGGAGGCCGGACGCGTACCTCGATGCCAAG GGTGGTGCGAACGGCATGAACAAGAGACCCAGAGGGAAGCAGCAGCCGTCT
genomic: TCAGCGGCGGGTTGAGGAAGAGGAGGCCGGACGCGTACCTCGATGCCAAGgtgagaggtt ... aaattggcagGGTGGTGCGAACGGCATGAACAAGAGACCCAGAGGGAAGCAGCAGCCGTCT
attgtcaagtctttgactgacagttgtgtgtcaaaaaaaaaactgaaattggcagGGTGGTGCGAACGGCATGAACAAGAGACCCAGAGGGAAGCAGCAGCCGTCTGGCCTCTCTGAGATCGCGGCGGCGCCCGGGAAAGGGAAGCAGGAGAGGC
gactgac putative branch site (score: 2)
aaaaaaaaaactgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaggttcaggcatggacggcggtgctgcttctgctgaattgtcaagtctttgactgacagttgtgtgtcaaaaaaaaaactgaaattggcagGGTGGTGCGAACGGCATGAACAAGAGACCCAGAGGGAAGCAGCAGCCGTCTGGCCTCTCTGAGATCGCGGCGGCGCCCGGGAAAGGGAAGCAGGAGAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG