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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagggctgagcctttgtttcttttccccgatcacagagagagatctctgcggcgggtgtgaacgacatgggggttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTCTCCAAGCGGGCGGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCA

Basic information

species Zea mays
transcript GRMZM2G101217_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101217_T05 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g68390.1 (Oryza sativa), 3'ss of exon 1
gtaagggct--gagcctttgtttcttttcccc----gatcacagagagagatctctgcggcgggtgtgaacgacatgggggttct-----cgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTCTCCAAGCGGGCGGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCA
||||| |||  | ||    |||||     |      |  | ||| ||||  ||  ||  |||||||   |     |||| | |       ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||| || ||| |||||||||||||||
gtaagcgctcggggcggaggtttcgcgggctgggaggggcgcagtgagatctccttgtagcgggtgatgatttggtgggagcttcgtgcgcgcagGTGCGTGACTTCGTGAGGTCGGCGCTGTACGACCCCAACCATGGCTACTTCTCCAAGCGGTCGGGACCCGTGGGCGTGCTCGACTCCAGCATCCGCTTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211531113|gb|FL426903.1|FL426903
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|50336106|gb|CO531232.1|CO531232
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|50325602|gb|CO520728.1|CO520728
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211153475|gb|FL406036.1|FL406036
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211057983|gb|FL426573.1|FL426573
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211269212|gb|FL410574.1|FL410574
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211209580|gb|FL394645.1|FL394645
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCC-ATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|89250708|gb|DY622494.1|DY622494
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211491486|gb|FL425979.1|FL425979
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|50337135|gb|CO532261.1|CO532261
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|101391071|gb|EB817469.1|EB817469
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|19436955|gb|BM953365.1|BM953365
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|37417541|gb|CF646424.1|CF646424
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|76924073|gb|DV169790.1|DV169790
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|93012540|gb|EB638060.1|EB638060
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211063350|gb|FL405207.1|FL405207
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211197467|gb|FL425782.1|FL425782
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGT---ACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|71418854|gb|DR804568.1|DR804568
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211511752|gb|FL412067.1|FL412067
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211164475|gb|FL391064.1|FL391064
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211428747|gb|FL388358.1|FL388358
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211524044|gb|FL387968.1|FL387968
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCACCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|148959299|gb|EE010710.2|EE010710
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211079207|gb|FL387329.1|FL387329
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|71312573|gb|DR792811.1|DR792811
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211209713|gb|FL401773.1|FL401773
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211054342|gb|FL401189.1|FL401189
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211428657|gb|FL384948.1|FL384948
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211463727|gb|FL386698.1|FL386698
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|148960597|gb|EE011219.2|EE011219
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|211085712|gb|FL420035.1|FL420035
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCC-ATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|93012306|gb|EB637826.1|EB637826
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|71303088|gb|DR787655.1|DR787655
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|71327533|gb|DR800378.1|DR800378
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
EST: gi|76281532|gb|DV021100.1|DV021100
EST:     CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTG                         GTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC
genomic: CGGCTGCGCTGTTCTCATCGGGGATTCTCGCCGGCAACAAGCCGATTCTGgtaagggctg ... gttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgatcacagagagagatctctgcggcgggtgtgaacgacatgggggttctcgcagGTGCGTGACTTCGTGAGGTCAGCGTTGTACGACCCCAACCATGGCTACTTCTCCAAGCGGGCGGGACCGGTGGGCGTTCTTGACGCCAGCATCCGCTTCA
                                              ttctcgc  CT-rich tract