1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...taaatgttctctatactgtttttgagacttcgaatctgaatattatctcgtcttggttgataattaccgactggccatttacaatcttgaaaatgtgcagCATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATGTACTACGGATGCAGCGAGAGAAGCACGGGTTTCAGAT
species | Zea mays |
transcript | GRMZM2G101181_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCCAAACAG CATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATGEST: gi|211413345|gb|FL280504.1|FL280504
genomic: TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCTAAACAGgtaatttgtt ... aaatgtgcagCATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATG
EST: TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCTAAACAG CATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATGEST: gi|32865075|gb|CF004757.1|CF004757
genomic: TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCTAAACAGgtaatttgtt ... aaatgtgcagCATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATG
EST: TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCCAAACAG CATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATGEST: gi|67022216|gb|CO450965.1|CO450965
genomic: TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCTAAACAGgtaatttgtt ... aaatgtgcagCATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATG
EST: TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCCAAACAG CATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATGEST: gi|37418679|gb|CF647011.1|CF647011
genomic: TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCTAAACAGgtaatttgtt ... aaatgtgcagCATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATG
EST: TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCTAAACAG CATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATGEST: gi|76282456|gb|DV022024.1|DV022024
genomic: TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCTAAACAGgtaatttgtt ... aaatgtgcagCATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATG
EST: TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCTAAACAG CATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATGEST: gi|148935747|gb|EC879791.2|EC879791
genomic: TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCTAAACAGgtaatttgtt ... aaatgtgcagCATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATG
EST: TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCTAAACAG CATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATGEST: gi|211415883|gb|FL280506.1|FL280506
genomic: TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCTAAACAGgtaatttgtt ... aaatgtgcagCATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATG
EST: TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCCAAACAG CATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATG
genomic: TCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCTAAACAGgtaatttgtt ... aaatgtgcagCATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATG
tctcgtcttggttgataattaccgactggccatttacaatcttgaaaatgtgcagCATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATGTACTACGGATGCAGCGAGAGAAGCACGGGTTTCAGAT
ggttgat putative branch site (score: 5)
ttgataatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaatgttctctatactgtttttgagacttcgaatctgaatattatctcgtcttggttgataattaccgactggccatttacaatcttgaaaatgtgcagCATAGAAACTACGAACCTATCGATATTTGGGAATCCAAGTATTCCAGCATGTACTACGGATGCAGCGAGAGAAGCACGGGTTTCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC