1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttacgcaattttgactatgcagcgttgtacatgttaaatattagccttttggttgtgaaaaaaatttgagcaccccaaatacatttccatctcgcaacagGCGGTGCTTTGGCTGCTTCCTGCAGGTTGGAGTTTCTGAATGGCCAATCCCAGGGATGCGGTGGACGTCAGCTCCTCCATGTCGGAGCTGAGCGTAGAAG
species | Zea mays |
transcript | GRMZM2G101053_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGGAGGCAGATACAGCCTCTGGATCCAGCCCCGCTGCATCTCCGCTGTG GCGGTGCTTTGGCTGCTTCCTGCAGGTTGGAGTTTCTGAATGGCCAATCCCEST: gi|93282479|gb|EB674743.1|EB674743
genomic: GCGGAGGCAGATACAGCCTCTGGATCCAGCCCCGCTGCATCTCCGCTGTGgtgagcgcgt ... ctcgcaacagGCGGTGCTTTGGCTGCTTCCTGCAGGTTGGAGTTTCTGAATGGCCAATCCC
EST: GCGGAGGCAGATACAGCCTCTGGATCCAGCCCCGCTGCATCTCCGCTGTG GCGGTGCTTTGGCTGCTTCCTGCAGGTTGGAGTTTCTGAATGGCCAATCCC
genomic: GCGGAGGCAGATACAGCCTCTGGATCCAGCCCCGCTGCATCTCCGCTGTGgtgagcgcgt ... ctcgcaacagGCGGTGCTTTGGCTGCTTCCTGCAGGTTGGAGTTTCTGAATGGCCAATCCC
cttttggttgtgaaaaaaatttgagcaccccaaatacatttccatctcgcaacagGCGGTGCTTTGGCTGCTTCCTGCAGGTTGGAGTTTCTGAATGGCCAATCCCAGGGATGCGGTGGACGTCAGCTCCTCCATGTCGGAGCTGAGCGTAGAAG
tttccatctc CT-rich tract
ttgtgaaaaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacgcaattttgactatgcagcgttgtacatgttaaatattagccttttggttgtgaaaaaaatttgagcaccccaaatacatttccatctcgcaacagGCGGTGCTTTGGCTGCTTCCTGCAGGTTGGAGTTTCTGAATGGCCAATCCCAGGGATGCGGTGGACGTCAGCTCCTCCATGTCGGAGCTGAGCGTAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
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