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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gagagaatttgggttggatccatgtggctgggacgtgtgagggcgaaatttttggtggtgaatgacatgatctccctctgtgtatgtgtgtggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT

Basic information

species Zea mays
transcript GRMZM2G101020_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA02G05630.2 (Glycine max), 3'ss of exon 1
gagagaatttgggttggatccatgtggctgggacgtgtgagggcgaaatttttggtggtgaatgacatg--atctccctctgtgtat-gtgtgtggctcg-cagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
     || |     |   ||       |   ||  | |    |    ||||   |        | | |   ||||    | |||| | || | ||  |   |||| ||||| ||||||||||| || || ||||| |||||||| || ||||| ||||| || ||| | || ||||| || ||||| || |||||||| || ||
---gtaact--aactaactcatcaaatcaaagagttttttttgtctcatttcccgaaaccgtcgtcgttttatcttaaaccgtgtgtcgtttttgttttttcagGTATGGGCGCGGCGTACGGCACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT

upper sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA04G00950.1 (Glycine max), 3'ss of exon 1
gagagaatttgggttggatccatgtggctgggacgtg-tgagggcgaaatttttggtggtgaatgacatgatctccctc-tgtgtatgtgtgtggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
      || ||     |||  ||  |   |   | |  |    | |   |||   ||| | ||     |||      || | ||||| ||    | |   ||| ||||| || || || || ||||| |||||||| || |||||||| ||||||||||| ||| | || ||||| || |||||||| || || || || ||
-cactcatgtgaaagtgattgat-cgatcgaatcttaatcttagggttgtttgaagtgataaaatctgtgaggaatttcatttgtatttgaactgttgatagGTATGGGAGCTGCCTATGGCACAGCAAAGAGTGGTGTGGGCGTGGCTTCCATGGGTGTGATGAGACCTGAGCTGGTGATGAAGTCTATTGTCCCTGTTGT

upper sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA06G00980.1 (Glycine max), 3'ss of exon 1
gagagaatttgggttggatccatgtggctgggacgtgtgagggcgaaatttttggtggt--gaatgacatgatctccctctgtgta----tgtgtgtggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
     |||||     |  |  | |||  ||   ||   ||     ||  ||  ||| ||  |  |||  ||||     | ||||      | | | | | |   ||| ||||| || || || || ||||| ||||||||||| |||||||| ||||||||||| ||| | || ||||| || |||||||| || || || || ||
-----aatttcacacgtgtgaaagtgattgat-cgatcgaattttaatcttagggttgtttgtttgaattgataaaaatttgtgaggaattttattttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCATGGGTGTAATGAGACCTGAGCTGGTGATGAAGTCGATTGTTCCTGTTGT

upper sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA14G23990.1 (Glycine max), 3'ss of exon 1
----------------------------------------------------------------------------------------------gagagaatttgggttggatccatgtggctgggacgtgtgagggcgaaatttttggtggtgaatgacatgatctccctctgtgtatgtgtgtggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
                                                                                              | | || ||   |     |   |||     |    ||| | ||   ||       || |  ||  | ||  ||   | | | |     | ||  | | ||| ||||| ||||||||||| || || |||||||| || || |||||||| ||||| || ||| | || ||||| || |||||||| |||||||| |||||
gttcgccactctctctatctctctctttttgtttataattttttatttaatttaacgataacaacaatactactaataataataccaagctctagcgtgagttattgaaaactttctgttatctgtctttgttacggattaaaaaaatatgatttattccgtggcctttatttttat-----tatgattggtagGTATGGGAGCGGCGTACGGAACGGCAAAGAGTGGGGTGGGGGTGGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAGTCGATCGTGCCGGTGGT

upper sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA12G04090.1 (Glycine max), 3'ss of exon 1
gagagaatttgggttggatccatgtggctgggacgtgt-gagggcgaaatttttggtggtgaatga-catgatctccctctgtgtatgtgtgtggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
  |   ||   |   | |         ||| |     | ||  ||      |||  ||  || | | | | |        ||| |       |||   | ||| ||||| || || || || ||||| ||||||||||| |||||||| || |||||||| ||| | || ||||| || |||||||| || || || || ||
-tgtatataaagaaagaaaaagaaattctgagcttcttcgatagctttgcattttctgtagatttatctttaatatgaattgtttgaactgatggag-gaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCGATGGGTGTGATGAGACCGGAGCTGGTGATGAAGTCTATTGTCCCTGTTGT

upper sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA11G11760.1 (Glycine max), 3'ss of exon 1
gagagaatttgggt-tggatccatgtggctgggacgtgtgagggcgaaatttttggtggtgaatgacat-----gatctccctctgtgtatgtgtgtggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
       | || || |  ||  |    |          | || ||    |  || |   || ||    |     ||| |  || |     |   ||  |   | ||| ||||| || || || || ||||| ||||||||||| |||||||| || |||||||| ||| | |||||||| || |||||||| || || || || ||
------ttatgcgtatatataaagaaagacaaagaaattcagagcttcttcgttagctttgcattttttctgtagatttatctttaatactaattgatggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGATGGGTGTGATGAGACCAGAGCTGGTGATGAAGTCTATTGTCCCTGTTGT

upper sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 1
-gagagaatttgggttggatccatgtggctgggacgtgtgagggcgaaatttttggtggtga-atgacatgatctccctctgtgtat-gtgtgtggctcg-cagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
  |   || |    |   ||| | |  | |      | |        |||||  |     |   |    | ||||    | |||| | || | ||  |   |||| ||||| ||||||||||| || || ||||| |||||||| || ||||| ||||| || ||| | || ||||| || ||||| || |||||||| || ||
gtaactaactc--atcaaatcaaag-agtttttttttttttttttacaatttccgaaaccggcgtcgttttatctgaaaccgtgtgtcgtttttgttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT

upper sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT1G19910.1 (Arabidopsis thaliana), 3'ss of exon 1
-----gagagaatttgggttggatccatgtggctgggacgtgtgagggcgaaatttttggtggtgaatgacatgatctccctctgtgtatgtgtgtggc-tcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
         || ||     |    ||       |    | | |     |  ||||  |  || |  |  |  ||||||    |  |      |  |    |  |||| ||||| || |||||||||||||| ||||| || || || || ||||| |||||||| ||| | |||||||| || ||||| || || || || || ||
gtaccatctgatttctccattcccccgatctcttatctctttttttcccagaattgattttgatcca-aatctgatctgatccgattcgatcggattatgtttcagGTATGGGAGCAGCGTACGGGACAGCGAAGAGCGGGGTTGGTGTAGCGTCGATGGGTGTGATGAGACCAGAGCTTGTGATGAAATCGATTGTTCCTGTTGT

upper sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 1
gagagaatttgggttggatccatgtggctgggacgtgtgagggcgaaa---tttttggtggtgaatgacatgatctccctctgtgtatgtgt---gtggctc----gcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
         |  |  | | | | |||  ||     |   |   || ||   |||   ||||  |   |   |   |   |||  | |||| |    |||||      |||||||||| ||||| || ||||| || ||||| || || || ||||| |||||||| || ||||| || |||||||||||||| || || || || || ||
---------tccgacgaaacaaagtg-ttgtattttcccacatcggaactgtttcctgtggaaacaaatggggcttttttcttggaatgtttctaatggcttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCATGGGAGTGATGCGACCGGAGCTCGTCATGAAATCGATTGTCCCAGTTGT

upper sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 1
lower sequence: EDP08338 (Chlamydomonas reinhardtii), 3'ss of exon 1
----------------------------------------------------------------------------------------------gagagaatttgggttggatccatgt--ggctgggacgtgtgagggcgaaatttttggtggtgaatgacatgatctccctctgtgtatgtgtgtggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
                                                                                                   |  ||     | || || ||  | |    |     |  | |    | |   | || |  |||      | | | | |   |  |         ||||||||||| || ||||| || || ||||||   ||||| ||| | || |||||||||||||||||||| ||||| |||||||||  ||| |||||||||||
gtgagtatggtggtggacggcgggaggaagagacgccacacagccgtgttcgcgttggagggaggcagattcgcgctttctggcccccagtcaccttgcagcttcaccagcatgcaagttcgacgataaatccagcagcctgcctatcccgcggaggctgagtctgcccctccccgcaaacttcatcattgtgcagGCATGGGCGCCGCGTATGGCACTGCCAAGTCGGGCGTGGGCATTGCCTCCATGGGTGTCATGCGCCCTGAGCTGGTCATGAAGAGCATTGTGCCCGTGGT

upper sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S2_120V6.1 (Physcomitrella patens), 3'ss of exon 1
gagagaatttgggttggatccatgtggctgggacgtgtgagggcgaaatttttggtggtgaatgacatgatctccctctgtgtatgtg-tgtggct--cgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
|  |  | | | ||         |    || ||||       | |||   ||| ||    | |      | | |  ||  ||  |  | ||| | |  |||||||||||| || || || || || ||||| ||||| || || ||||| || |||||||||||||| || ||||| || |||||||||||||| || |||||
gccaccact-gtgtcactgttgggaaagtgagacgatgtgcagtgaatcattttgta--cagttgtgaaaccgcgttccttgactacgatgttgttggcgcagGCATGGGCGCTGCCTATGGAACGGCCAAAAGTGGAGTTGGAGTGGCATCTATGGGTGTCATGCGACCTGAGCTAGTGATGAAGTCCATCGTCCCAGTGGT

upper sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S45_100V6.1 (Physcomitrella patens), 3'ss of exon 1
---gagagaatttg-ggttggatccatgtggctgggacgtgtgagggcgaaatttttggtggtgaatgacatgatctccctctgtgtatgtgtgtggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
    || ||  ||| ||    |||    ||  | | | |  |  |  |    |  | | |  | |  || ||| |  |||   | | | || | ||   |||||||||||| || || || || |||||||||||||| || || ||||| ||||||||||| ||||| || ||||| || |||||||| |||||||| |||||
aagcagtgacgttgagggcctatcttgttgttttgaaggactttgatcagcttgctcgctctttaccgatatgttaaccc---gaggaggtttttgag-cgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTGCCAGTGGT

upper sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S1_66V6.1 (Physcomitrella patens), 3'ss of exon 1
-gagagaatttgggttggatccatgtggctgggacgtgtgagggcgaaatttttggtggtgaatgacatgatctccctctgtgtatgtgtgtggctcg---cagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
  || | |   |  ||  | || ||  | |      | | |    ||      || |  ||||   | ||  |||   |   |     ||  |  | |   |||||||||| || || || || |||||||||||||| || || ||||| ||||||||||| ||||| |||||| | || ||||| || |||||||| || ||
gtagcgtacaagattttca-ccgtgcagtttaattttcttatttggag---cgtgattttgaacttcctggactctgacaaagcggtggttggttttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCAGAGTTGGTGATGAAATCTATCGTGCCAGTAGT

upper sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
----gagagaatttgggt----tggatccatgtggctgg---gacgtgtgagggcgaaatttttggtggtgaatgacatgatctccctctgtgtatgtgtgtggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
     || ||  |||||         | |  ||| ||         | ||    |||||||  | |   ||||| | |||          ||| | || | | || |||||||||||| || || || || |||||||||||||| || || ||||| ||||||||||| ||||| || ||||| || |||||||| ||||| || |||||
ataacagcgatgttgggcaccccactttcgagtgcctcatctaggatatggcctcgaaattcctagatatgaataaaatg----------gtgaaggt-ttttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT

upper sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S200_79V6.1 (Physcomitrella patens), 3'ss of exon 1
--------------gagagaatttgggttggatccatgtggctgggacgtgtgagggcgaaatttttggtggtgaatgacatgatctccctctgtgtatgtgtgtggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
                |  | ||  | ||  ||       ||| ||  ||| ||   ||||| |  |||   ||||  | |||       |   |||   || ||      |||||||||| || || || ||||||||||||||||| || || ||||| ||||||||||| ||||| || ||||| || |||||||| |||||||| |||||
cccgtgaacggtgttgggcacttaagcttcaatttcctcagctagg--gtgcgacttcgaaactcctggacatgaactaaatg------ttgaatgttattgcgt------cagGCATGGGCGCTGCTTATGGGACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTGCCTGTGGT

upper sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 1
lower sequence: EFJ33972 (Selaginella moellendorffii), 3'ss of exon 1
gagagaatttgggttggatccatgtggctgggacgtgtgagggcgaaatttttggtggtgaatgacatgatctccctctgtgtatgtgtgtggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
                                      |   || | ||| ||  |  |   |||  | ||| |  |  |  |   |   | | |  |||||||||| || || || || || |||||||| ||||| ||||||||||||||||| |||||| | || |||||||| ||||| || ||||| || |||||
--------------------------------------gtaagccagattctttttcctctttgatctaatcgcaatgcg-atggatcaatcgattacagGCATGGGAGCTGCCTATGGCACTGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGCGTCATGAGACCGGAGCTCGTGATGAAATCGATCGTCCCGGTGGT

upper sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 1
lower sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
-------------------------------------------------------------------------------gagagaatttgggt--tggatccatgtggctgggacgtgtgagggcga-aatttttggtggtgaatgacatgatctccc-tctgtgtatgtg-tgtggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
                                                                               |   ||  |||||   ||||| |   |  ||| |   | |    || | |||     |   |  ||  ||  ||  ||| | |   ||||   | |   | ||||||||||| || || || || || || |||||||| || || ||||| |||||||| || ||||| || |||||||| ||||| || |||||||| |||||
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgagatttcgatcccaaaattccccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT

upper sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 1
lower sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
-------------------------------------------------------------------------------gagagaatttgggt--tggatccatgtggctgggacgtgtgagggcgaaatttttggtggtg-aatgacatgatctccctctgtgt-atgtg-tgtggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
                                                                               |   ||  |||||   ||||| |   |  ||| |   | |    || | | |   | |  |   ||  ||  ||  |||  | | | |||   | |   | ||||||||||| || || || || || || |||||||| || || |||||||||||||| || ||||| || |||||||| ||||| || |||||||| |||||
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211511774|gb|FL069790.1|FL069790
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTTGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|20802971|gb|BQ294021.1|BQ294021
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|86467026|gb|DY233396.1|DY233396
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|6637062|gb|AW261334.1|AW261334
EST:     GCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGCGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: GCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|101385273|gb|EB814682.1|EB814682
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|71446016|gb|DR827066.1|DR827066
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|149095026|gb|EE180624.2|EE180624
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|211516489|gb|FL069822.1|FL069822
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTTGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|74232741|gb|DT640655.1|DT640655
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|211516483|gb|FL069816.1|FL069816
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTTGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|211514129|gb|FL069804.1|FL069804
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|84980337|gb|DW530686.1|DW530686
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTTGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|211514125|gb|FL069800.1|FL069800
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTTGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|71442202|gb|DR823252.1|DR823252
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|74237362|gb|DT645276.1|DT645276
EST:     CCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|71429843|gb|DR810893.1|DR810893
EST:     NNNNNNTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|211516475|gb|FL069808.1|FL069808
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTTGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|211514118|gb|FL069793.1|FL069793
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|211516478|gb|FL069811.1|FL069811
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTTGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|31351546|gb|CD435903.1|CD435903
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTTGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|40336798|gb|CK370868.1|CK370868
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|38568999|gb|CF974884.1|CF974884
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTTGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|50332861|gb|CO527987.1|CO527987
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|116820745|gb|EC863988.1|EC863988
EST:     CG-CCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTTGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|32910462|gb|CF015274.1|CF015274
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTTGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|148999454|gb|EE036409.2|EE036409
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|15632517|gb|BI679610.1|BI679610
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTTGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|211514122|gb|FL069797.1|FL069797
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|101391307|gb|EB817588.1|EB817588
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|9255419|gb|BE345887.1|BE345887
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|149086052|gb|EE175581.2|EE175581
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|211516481|gb|FL069814.1|FL069814
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTTGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|91057117|gb|EB167535.1|EB167535
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|211514128|gb|FL069803.1|FL069803
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTTGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|74237363|gb|DT645277.1|DT645277
EST:     CCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|211516480|gb|FL069813.1|FL069813
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTTGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|26456439|gb|CA828022.1|CA828022
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|12045991|gb|BF728026.1|BF728026
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTTGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|9255286|gb|BE345754.1|BE345754
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|78179576|gb|DV549949.1|DV549949
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTTGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|33771160|gb|CF272821.1|CF272821
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTTGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|22520841|gb|BU079652.1|BU079652
EST:     CGCCCCTTTCTTCTGTTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|149090057|gb|EE179351.2|EE179351
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|211514120|gb|FL069795.1|FL069795
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|27522067|gb|CA989173.1|CA989173
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|211516476|gb|FL069809.1|FL069809
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCSGCGTACGGGACAGCCAAGAGTGGCGTTGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|148939184|gb|EC883643.2|EC883643
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|211516485|gb|FL069818.1|FL069818
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|33770811|gb|CF273105.1|CF273105
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTTGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|211518849|gb|FL069832.1|FL069832
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTTGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|211514119|gb|FL069794.1|FL069794
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTTGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|31664641|gb|CD573574.1|CD573574
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|6827357|gb|AW331000.1|AW331000
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTTGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA
EST: gi|211516482|gb|FL069815.1|FL069815
EST:     CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCAT                         GCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTTGGCGTGGCGTCCA
genomic: CGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 211

AGCGGCAGCAGTAAGGGGGAGATGTCGTCGGCGTTCAGCGGCGATGAGACCGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 434

AGCGGCAGCAGTAAGGGGGAGATGTCGTCGGCGTTCAGCGGCGATGAGACCGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 199

AGCGGCAGCAGTAAGGGGGAGATGTCGTCGGCGTTCAGCGGCGATGAGACCGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 353

AGCGGCAGCAGTAAGGGGGAGATGTCGTCGGCGTTCAGCGGCGATGAGACCGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgc ... tggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gagagaatttgggttggatccatgtggctgggacgtgtgagggcgaaatttttggtggtgaatgacatgatctccctctgtgtatgtgtgtggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - -atccatg
- - - - - - - - - - - - tggctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - -ggtggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgtg