1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttctgcatttttgctttgtctcatcatctcaggatcatataacacttttctggtttgctgcattttgaaatgagtaattactaatatttttatgtttcagTCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGCCATACCCAGAGCGTGTTGGTGATCCAGACTGTAGCTATTACATGAGGAC
species | Zea mays |
transcript | GRMZM2G100794_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAG TCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGCEST: gi|149000507|gb|EE037687.2|EE037687
genomic: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAGgttagcaacc ... tatgtttcagTCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGC
EST: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAG TCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGCEST: gi|148938171|gb|EC882453.2|EC882453
genomic: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAGgttagcaacc ... tatgtttcagTCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGC
EST: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAG TCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGCEST: gi|211078940|gb|FL257763.1|FL257763
genomic: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAGgttagcaacc ... tatgtttcagTCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGC
EST: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAG TCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGCEST: gi|149083012|gb|EE172259.2|EE172259
genomic: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAGgttagcaacc ... tatgtttcagTCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGC
EST: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAG TCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGCEST: gi|71772125|gb|DR970062.1|DR970062
genomic: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAGgttagcaacc ... tatgtttcagTCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGC
EST: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAG TCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGCEST: gi|78089927|gb|DV518301.1|DV518301
genomic: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAGgttagcaacc ... tatgtttcagTCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGC
EST: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAG TCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGCEST: gi|148944209|gb|EC889301.2|EC889301
genomic: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAGgttagcaacc ... tatgtttcagTCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGC
EST: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAG TCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGCEST: gi|211078942|gb|FL257765.1|FL257765
genomic: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAGgttagcaacc ... tatgtttcagTCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGC
EST: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAG TCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGCEST: gi|211303560|gb|FL306497.1|FL306497
genomic: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAGgttagcaacc ... tatgtttcagTCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGC
EST: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAG TCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGCEST: gi|71765018|gb|DR962955.1|DR962955
genomic: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAGgttagcaacc ... tatgtttcagTCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGC
EST: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAG TCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGCEST: gi|148959485|gb|EC905484.2|EC905484
genomic: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAGgttagcaacc ... tatgtttcagTCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGC
EST: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAG TCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGCEST: gi|148946035|gb|EC891334.2|EC891334
genomic: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAGgttagcaacc ... tatgtttcagTCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGC
EST: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAG TCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGCEST: gi|71315475|gb|DR794342.1|DR794342
genomic: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAGgttagcaacc ... tatgtttcagTCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGC
EST: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAG TCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGCEST: gi|78086204|gb|DV514597.1|DV514597
genomic: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAGgttagcaacc ... tatgtttcagTCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGC
EST: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAG TCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGCEST: gi|8367349|gb|BE050294.1|BE050294
genomic: CTCCTCGGCCGCCGCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAGgttagcaacc ... tatgtttcagTCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGC
EST: GCAGGTATGACGATCGGGGCCCACGGGGTGGACCAAG TCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGC
genomic: GCAGCTATGACGATCGGGGCCCACGGGGTGGACCAAGgttagcaacc ... tatgtttcagTCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGC
ttttctggtttgctgcattttgaaatgagtaattactaatatttttatgtttcagTCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGCCATACCCAGAGCGTGTTGGTGATCCAGACTGTAGCTATTACATGAGGAC
tactaat putative branch site (score: 202)
tattttt CT-rich tract
attttgaaatgagtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctgcatttttgctttgtctcatcatctcaggatcatataacacttttctggtttgctgcattttgaaatgagtaattactaatatttttatgtttcagTCACAGAAGCGATGTGGCAGATGAATTTAGGAGATGCCATGGAACTGGGGCCATACCCAGAGCGTGTTGGTGATCCAGACTGTAGCTATTACATGAGGAC
ttctgca
- - - - ttttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - ttgctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaaatg