Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76019642|gb|DT946812.1|DT946812EST: GAGGGCGTGCCTCAGGAATTCCACGGAGCCAAGCTAATTGGCTCATGGAG CTTCCCTTGCCCCTGGTATCAAAAGGTTCCGCTGTCGCTGGCCCTCAGTCC
genomic: GAGGGCGTGCCTCAGGAATTCCACGGAGCCAAGCTAATTGGCTCATGGAGgtgagttccc ... atcccagcagCTTCCCTTGCCCCTGGTATCAAAAGGTTCCGCTGTCGCTGGCCCTCAGTCC
EST:
gi|211101764|gb|FL133078.1|FL133078EST: GAGGGCGTGCCTCAGGAATTCCACGGAGCCAAGCTAATTGGCTCATGGAG CTTCCCTTGCCCCTGGTATCAAAGAG-TTCCGCTGTCGCTGGCCCTCAGTC
genomic: GAGGGCGTGCCTCAGGAATTCCACGGAGCCAAGCTAATTGGCTCATGGAGgtgagttccc ... atcccagcagCTTCCCTTGCCCCTGGTATCAAA-AGGTTCCGCTGTCGCTGGCCCTCAGTC
EST:
gi|211101762|gb|FL133076.1|FL133076EST: GAGGGCGTGCCTCAGGAATTCCACGGAGCCAAGCTAATTGGCTCATGGAG CTTCCCTTGCCCCTGGTATCAAAAGGTTCCGCTGTCGCTGGCCCTCAGTCC
genomic: GAGGGCGTGCCTCAGGAATTCCACGGAGCCAAGCTAATTGGCTCATGGAGgtgagttccc ... atcccagcagCTTCCCTTGCCCCTGGTATCAAAAGGTTCCGCTGTCGCTGGCCCTCAGTCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggaatgctaataccaacaaaataatagggtaaggtctttgatttcatcccagcagCTTCCCTTGCCCCTGGTATCAAAAGGTTCCGCTGTCGCTGGCCCTCAGTCCTCGAATCATCGCAGAAGTTGCTAGATTCAAGCCTGACATTATTCACGCC
tttcatccc CT-rich tract
aacaaaataata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagttccccttctattcttctctgctgtgcgctgctgctgtcccggttcgggaggttgaatgctgaggggaatgctaataccaacaaaataatagggtaaggtctttgatttcatcccagcagCTTCCCTTGCCCCTGGTATCAAAAGGTTCCGCTGTCGCTGGCCCTCAGTCCTCGAATCATCGCAGAAGTTGCTAGATTCAAGCCTGACATTATTCACGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT