Sequence
atgc intronic sequence ATGC exonic sequencegtgagttccccttctattcttctctgctgtgcgctgctgctgtcccggttcgggaggttgaatgctgaggggaatgctaataccaacaaaataatagGGTAAGGTCTTTGATTTCATCCCAGCAGCTTCCCTTGCCCCTGGTATCAAAAGGTTCCGCTGTCGCTGGCCCTCAGTCCTCGAATCATCGCAGAAGTTGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G100652_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA03G14200.1 (Glycine max), 3'ss of exon 3
gtgagttccccttctattcttctctgctgtgcgctgctgctgtcccggttcgggaggttgaatgctgaggggaatgctaataccaacaaaataatagGGTAAGGTCTTTGATTTCATCCCA-GCAGCTTCCCTTGCCCCTGGTATCAAAAGGTTCCGCTGTCGCTGGCCCTCAGTCCTCGAATCATCGCAGAAGTTGC----------------------------
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------------------------tattgtac-ttgccaatatcttc-tttaaacttatgattgctaccacaaccattgcttcgtacgaatgatcttcatttaaacaaaaacattgaaaaatgcagCTTCCCTTGTCCCTGGTATCAAAAGGTGCCTCTCTCTTTGGCACTTAGTCCAAGAATAATTTCTGCGGTTGCTGAGTTTAAGCCTGACATAATACATGCA
upper sequence: GRMZM2G100652_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA01G27840.1 (Glycine max), 3'ss of exon 3
--gtg-agttccccttctattcttctctgctgtgcgctgctgctgtcccggttcgggaggttgaatgctgaggggaatgctaataccaacaaaataatagGGTAAGGTCTTTGATTTCATCCCAGCAGCTTCCCTTGCCCCTGGTATCAAAAGGTTCCGCTGTCGCTGGCCCTCAGTCCTCGAATCATCGCAGAAGTTGC----------------------------
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tattgtaattgccagtatgttctttaaagttatg-gttgctaccacagccatt------gcttcgtactaatg---atcttcatttaaacaaaa-aacaatgaaaat-----------------gcagCTTCCCTTGTCCCTGGTATCAAAAGGTACCCCTCTCTTTGGCACTTAGTCCAAGAATAATTTCTGCTGTTGCTGAGTTTAAGCCTGACATAATACATGCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76282419|gb|DV021987.1|DV021987EST: GAGGGCGTGCCTCAGGAATTCCACGGAGCCAAGCTAATTGGCTCATGGAG GGTAAGGTCTTTGATTTCATCCCAGCAGCTTCCCTTGCCCCTGGTATCAAA
genomic: GAGGGCGTGCCTCAGGAATTCCACGGAGCCAAGCTAATTGGCTCATGGAGgtgagttccc ... aaaataatagGGTAAGGTCTTTGATTTCATCCCAGCAGCTTCCCTTGCCCCTGGTATCAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcccggttcgggaggttgaatgctgaggggaatgctaataccaacaaaataatagGGTAAGGTCTTTGATTTCATCCCAGCAGCTTCCCTTGCCCCTGGTATCAAAAGGTTCCGCTGTCGCTGGCCCTCAGTCCTCGAATCATCGCAGAAGTTGC
tgctaat putative branch site (score: 2)
aacaaaataata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagttccccttctattcttctctgctgtgcgctgctgctgtcccggttcgggaggttgaatgctgaggggaatgctaataccaacaaaataatagGGTAAGGTCTTTGATTTCATCCCAGCAGCTTCCCTTGCCCCTGGTATCAAAAGGTTCCGCTGTCGCTGGCCCTCAGTCCTCGAATCATCGCAGAAGTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT