1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaagtccctcccctcgccgtcccgagcgccgccgcggttcgcagggtcctcggctgacgttcttgccttccgccgcagGTCGGGAAGGGGGTTTACATGCAGGCCGTCCGCGACATGGTCCAGAACAAGCGCCACCGCCTCATCATCGGCATGGACGACCTCCGCAATCACAATCTCG
species | Zea mays |
transcript | GRMZM2G100639_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGCAATGGCGGCGCATAAGCGCGCCTTCCTCGACTTCCTCGACCAAGAC GTCGGGAAGGGGGTTTACATGCAGGCCGTCCGCGACATGGTCCAGAACAAGEST: gi|30306471|gb|CD001144.1|CD001144
genomic: AGGCAATGGCGGCGCATAAGCGCGCCTTCCTCGACTTCCTCGACCAAGACgtaagtccct ... tccgccgcagGTCGGGAAGGGGGTTTACATGCAGGCCGTCCGCGACATGGTCCAGAACAAG
EST: AGGCAATGGCGGCGCATAAGCGCGCCTTCCTCGACTTCCTCGACCAAGAC GTCGGGAAGGGGGTTTACATGCAGGCCGTCCGCGACATGGTCCAGAACAAGEST: gi|18450616|gb|BM428894.1|BM428894
genomic: AGGCAATGGCGGCGCATAAGCGCGCCTTCCTCGACTTCCTCGACCAAGACgtaagtccct ... tccgccgcagGTCGGGAAGGGGGTTTACATGCAGGCCGTCCGCGACATGGTCCAGAACAAG
EST: GCATATGGCGGCGCATAAGCGCGCCTTCCTCGACTTCCTCGACCAAGTAC GTCGGTAAGGGGGTTTACATGCAGGCCGTCCGCGACATGGTCCAGAACAAEST: gi|74233767|gb|DT641681.1|DT641681
genomic: GCA-ATGGCGGCGCATAAGCGCGCCTTCCTCGACTTCCTCGACCAAG-ACgtaagtccct ... tccgccgcagGTCGGGAAGGGGGTTTACATGCAGGCCGTCCGCGACATGGTCCAGAACAA
EST: AGGCAATGGCGGCGCATAAGCGCGCCTTCCTCGACTTCCTCGACCAAGAC GTCGGGAAGGGGGTTTACATGCAGGCCGTCCGCGACATGGTCCAGAACAAG
genomic: AGGCAATGGCGGCGCATAAGCGCGCCTTCCTCGACTTCCTCGACCAAGACgtaagtccct ... tccgccgcagGTCGGGAAGGGGGTTTACATGCAGGCCGTCCGCGACATGGTCCAGAACAAG
gagcgccgccgcggttcgcagggtcctcggctgacgttcttgccttccgccgcagGTCGGGAAGGGGGTTTACATGCAGGCCGTCCGCGACATGGTCCAGAACAAGCGCCACCGCCTCATCATCGGCATGGACGACCTCCGCAATCACAATCTCG
ggctgac putative branch site (score: 51)
ttcttgccttccgcc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtccctcccctcgccgtcccgagcgccgccgcggttcgcagggtcctcggctgacgttcttgccttccgccgcagGTCGGGAAGGGGGTTTACATGCAGGCCGTCCGCGACATGGTCCAGAACAAGCGCCACCGCCTCATCATCGGCATGGACGACCTCCGCAATCACAATCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA