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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcgcgctctccagtgcactgcaattcgctcggaatcttccctgaatgcttctctgtggggtcgcagGTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTCGGCGTCCACGAGGCGGACACGGACTCCGACGCCGACTACAT

Basic information

species Zea mays
transcript GRMZM2G100260_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G100260_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g14040.1 (Oryza sativa), 3'ss of exon 1
gtgagcgcgctctccagtgc-act-gcaattcgctcggaa------------tcttccctgaatgct---tctctgtggg-------gtcgcagGTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTCGGCGTCCACGAGGCGGACACGGACTCCGACGCCGACTACAT
||||||| | || ||  | | ||| || |       |||             |  | ||||| || |   |  | |||||       || |||||| ||||||||  | ||||| ||||| ||||| || |||||||| || ||||||||||||||||| ||||| ||| ||||||| ||||||||
gtgagcgggttcccctctcccactcgctagctaggaggaggaggcgagcggctgattcctgattggttggttcccgtgggttttttggttgcagGTGGAGGGGCGGGTGGTGTCGGCGATTGGCCCCGGCCTCCTCGTCCTTGTCGGCGTCCACGAGGCCGACACCGACGCCGACGCTGACTACAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211144459|gb|FL048070.1|FL048070
EST:     GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAG                         GTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTCCTCGTC
genomic: GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAGgtgagcgcgc ... ggggtcgcagGTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTC
EST: gi|211144465|gb|FL048076.1|FL048076
EST:     GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAG                         GTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTC
genomic: GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAGgtgagcgcgc ... ggggtcgcagGTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTC
EST: gi|211144466|gb|FL048077.1|FL048077
EST:     GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAG                         GTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTC
genomic: GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAGgtgagcgcgc ... ggggtcgcagGTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTC
EST: gi|211144461|gb|FL048072.1|FL048072
EST:     GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAG                         GTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTC
genomic: GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAGgtgagcgcgc ... ggggtcgcagGTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTC
EST: gi|89248178|gb|DY619964.1|DY619964
EST:     GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAG                         GTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTC
genomic: GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAGgtgagcgcgc ... ggggtcgcagGTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTC
EST: gi|211144462|gb|FL048073.1|FL048073
EST:     GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAG                         GTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTC
genomic: GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAGgtgagcgcgc ... ggggtcgcagGTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTC
EST: gi|14701176|gb|BI233594.1|BI233594
EST:     GACACAGGATGAGGGCTG-GGTGCAGCGCGTCCTCTCGGCCAGTGTCGAG                         GTGCG-GGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGT
genomic: GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAGgtgagcgcgc ... ggggtcgcagGT-CGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGT
EST: gi|211144469|gb|FL048080.1|FL048080
EST:     GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAG                         GTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTC
genomic: GACACAGGATGAGGGCTGTGGTGCAGCGCGTCCTCTCGGCCAGTGTCGAGgtgagcgcgc ... ggggtcgcagGTCGAGGGGCGAATAGTGTCTGCGATCGGCCCTGGACTCCTCGTTCTCGTC