1 5' 3' | 2 5' 3' | 3 5' 3' |
gtactgttccccctactgttcttgcttcccgtgtcctgaccatttcagtattcgttcttgttactgatggtgttcttgtgatgaagGGTTGGGTCTGTGCTCAGGTGCCAGCAAGATGCAGGGTGTGTTGTCGAGGGTGAGGAGGCCCTTCACTCCGACGCAGTGGATGGAGCTGGAGCACCAGGC
species | Zea mays |
transcript | GRMZM2G099862_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCTTCCTTAAATCTTGCATGTGTGGGAACTAGGAGGCCATTGGTCACGG GGTTGGGTCTGTGCTCAGGTGCCAGCAAGATGCAGGGTGTGTTGTCGAGGGEST: gi|211458410|gb|FL252573.1|FL252573
genomic: TGCTTCCTTAAATCTTGCATGTGTGGGAACTAGGAGGCCATTGGTCACGGgtactgttcc ... tgtgatgaagGGTTGGGTCTGTGCTCAGGTGCCAGCAAGATGCAGGGTGTGTTGTCGAGGG
EST: TGCTTCCTTAAATCTTGCATGTGTGGGAACTAGGAGGCCATTGGTCACGG GGTTGGGTCTGTGCTCAGGTGCCAGCAAGATGCAGGGTGTGTTGTCGAGGGEST: gi|71437242|gb|DR818292.1|DR818292
genomic: TGCTTCCTTAAATCTTGCATGTGTGGGAACTAGGAGGCCATTGGTCACGGgtactgttcc ... tgtgatgaagGGTTGGGTCTGTGCTCAGGTGCCAGCAAGATGCAGGGTGTGTTGTCGAGGG
EST: TGCTTCCTTAAATCTTGCATGTGTGGGAACTAGGAGGCCATTGGTCACGG GGTTGGGTCTGTGCTCAGGTGCCAGCAAGATGCAGGGTGTGTTGTCGAGGGEST: gi|71444723|gb|DR825773.1|DR825773
genomic: TGCTTCCTTAAATCTTGCATGTGTGGGAACTAGGAGGCCATTGGTCACGGgtactgttcc ... tgtgatgaagGGTTGGGTCTGTGCTCAGGTGCCAGCAAGATGCAGGGTGTGTTGTCGAGGG
EST: TAAATCTTGCATGTGTGGGAACTAGGAGGCCATTGGTCACGG GGTTGGGTCTGTGCTCAGGTGCCAGCAAGATGCAGGGTGTGTTGTCGAGGGEST: gi|211458409|gb|FL252572.1|FL252572
genomic: TAAATCTTGCATGTGTGGGAACTAGGAGGCCATTGGTCACGGgtactgttcc ... tgtgatgaagGGTTGGGTCTGTGCTCAGGTGCCAGCAAGATGCAGGGTGTGTTGTCGAGGG
EST: TGCTTCCTTAAATCTTGCATGTGTGGGAACTAGGAGGCCATTGGTCACGG GGTTGGGTCTGTGCTCAGGTGCCAGCAAGATGCAGGGTGTGTTATCGAGGGEST: gi|78077453|gb|DV505887.1|DV505887
genomic: TGCTTCCTTAAATCTTGCATGTGTGGGAACTAGGAGGCCATTGGTCACGGgtactgttcc ... tgtgatgaagGGTTGGGTCTGTGCTCAGGTGCCAGCAAGATGCAGGGTGTGTTGTCGAGGG
EST: TGCTTCCTTAAATCTTGCATGTGTGGGAACTAGGAGGCCATTGGTCACGG GGTTGGGTCTGTGCTCAGGTGCCAGCAAGATGCAGGGTGTGTTGTCGAGGGEST: gi|30306791|gb|CD001464.1|CD001464
genomic: TGCTTCCTTAAATCTTGCATGTGTGGGAACTAGGAGGCCATTGGTCACGGgtactgttcc ... tgtgatgaagGGTTGGGTCTGTGCTCAGGTGCCAGCAAGATGCAGGGTGTGTTGTCGAGGG
EST: TGCTTCCTTAAATCTTGCATGTGTGGGAACTAGGAGGCCATTGGTCACGG GGTTGGGTCTGTGCTCAGGTGCCAGCAAGATGCAGGGTGTGTTGTCGAGGGEST: gi|76911661|gb|DV164370.1|DV164370
genomic: TGCTTCCTTAAATCTTGCATGTGTGGGAACTAGGAGGCCATTGGTCACGGgtactgttcc ... tgtgatgaagGGTTGGGTCTGTGCTCAGGTGCCAGCAAGATGCAGGGTGTGTTGTCGAGGG
EST: TGCTTCCTTAAATCTTGCATGTGTGGGAACTAGGAGGCCATTGGTCACGG GGTTGGGTCTGTGCTCAGGTGCCAGCAAGATGCAGGGTGTGTTGTCGAGGG
genomic: TGCTTCCTTAAATCTTGCATGTGTGGGAACTAGGAGGCCATTGGTCACGGgtactgttcc ... tgtgatgaagGGTTGGGTCTGTGCTCAGGTGCCAGCAAGATGCAGGGTGTGTTGTCGAGGG
tgtcctgaccatttcagtattcgttcttgttactgatggtgttcttgtgatgaagGGTTGGGTCTGTGCTCAGGTGCCAGCAAGATGCAGGGTGTGTTGTCGAGGGTGAGGAGGCCCTTCACTCCGACGCAGTGGATGGAGCTGGAGCACCAGGC
tactgat putative branch site (score: 2)
tgttctt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgttccccctactgttcttgcttcccgtgtcctgaccatttcagtattcgttcttgttactgatggtgttcttgtgatgaagGGTTGGGTCTGTGCTCAGGTGCCAGCAAGATGCAGGGTGTGTTGTCGAGGGTGAGGAGGCCCTTCACTCCGACGCAGTGGATGGAGCTGGAGCACCAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA