Sequence
atgc intronic sequence ATGC exonic sequence...atagttaaacttaatattttcttttttgtgtgtgctgaggacttccaatttacatgcccttctcattctctcagttcagcaactccacttgttacaacagCCTTCCAAGAACGCCAATGCAGATAGGAAGCACACCTGCATGTCATCAGATATAAGTGACCCTTCCACACCTAGGAAAGTTGAAGATGCCAAGAACATTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G099754_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os11g02830.2 (Oryza sativa), 3'ss of exon 1
-------------------atagttaaacttaatatt--ttcttttttgtgtgtgctgaggacttccaatttacatgcccttctcattctctcagttcagcaactccacttgttacaacagCCTTCCAAGAACGCCAATGCAGATAGGAAGCACACCTGCATGTCATCAGATATAAGTGACCCTTCCACACCTAGGAAAGTTGAAGATGCCAAGAACATTT
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cttttattttgtttgtacgagaatttctggtaaccttaattcgtttataccttaactattttttctttcttattgttgaaatgtcatcttctcagttcagCAGCTCCATTTGTTACAACATCCTGTCAAGAATGCTGTTGCAGAGAGGAAGCACACCCGCATCTCATCAGATATGAGTGATCCTTCAACACCTAGGAAAA---------------------
upper sequence: GRMZM2G099754_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os11g02830.1 (Oryza sativa), 3'ss of exon 1
------------------------atagttaaacttaatatt--ttcttttttgtgtgtgctgaggacttccaatttacatgcccttctcattctctcagttcagcaactccacttgttacaacagCCTTCCAAGAACGCCAATGCAGATAGGAAGCACACCTGCATGTCATCAGATATAAGTGACCCTTCCACACCTAGGAAAGTTGAAGATGCCAAGAACATTT
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cttgccttttattttgtttgtacgagaatttctggtaaccttaattcgtttataccttaactattttttctttcttattgttgaaatgtcatcttctcagTTCAGCAGCTCCATTTGTTACAACATCCTGTCAAGAATGCTGTTGCAGAGAGGAAGCACACCCGCATCTCATCAGATATGAGTGATCCTTCAACACCTAG--------------------------
upper sequence: GRMZM2G099754_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os12g02810.1 (Oryza sativa), 3'ss of exon 1
------------------------atagttaaacttaatatt--ttcttttttgtgtgtgctgaggacttccaatttacatgcccttctcattctctcagttcagcaactccacttgttacaacagCCTTCCAAGAACGCCAATGCAGATAGGAAGCACACCTGCATGTCATCAGATATAAGTGACCCTTCCACACCTAGGAAAGTTGAAGATGCCAAGAACATTT
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ttttatttttatcttatatgtatgagaatttatggtaaccttaattcgtttttaccttgactattttttctttcttgttgttgaaatgtcatcttctcagTTCAGCAGCTCCATTTGTTACAACATCCTGTCAAGAATGCTGTTGCAGAGAGGAAGCATACCCGCATCTCATCAGATATGAGTGATCCTTCAACACCTAG--------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|148932539|gb|EC876345.2|EC876345EST: CAACTGCGGCACACGGGAGGAGAATGCCGTCGTCGCTGCGCACGCGCAAG CCTTCCAAGAACGCCAATGCAGATAGGAAGCACACCTGCATGTCATCAGAT
genomic: CAACTGCGGCACACGGGAGGAGAATGCCGTCGTCGCTGCGCACGCGCAAGgtatccatct ... gttacaacagCCTTCCAAGAACGCCAATGCAGATAGGAAGCACACCTGCATGTCATCAGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atagttaaacttaatattttcttttttgtgtgtgctgaggacttccaatttacatgcccttctcattctctcagttcagcaactccacttgttacaacagCCTTCCAAGAACGCCAATGCAGATAGGAAGCACACCTGCATGTCATCAGATATAAGTGACCCTTCCACACCTAGGAAAGTTGAAGATGCCAAGAACATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - -gtgctga
- - - - - - - - - - - - - - - - - - - - - - - - -ttacatg