Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgtcactaggaattgctactgtttttttaggaagtactagtataaacaattcgagaatgatttttttgtatattccattctgatatgtttgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTTTAGACAAGGCTAAGCATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAA

Basic information

species Zea mays
transcript GRMZM2G099547_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G099547_T05 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g19470.1 (Oryza sativa), 3'ss of exon 1
-gtgtcactaggaattgctactgtttttttaggaagtactagtataaacaattcgagaatg-atttttttgtatatt---ccattctgatatgtttgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTTTAGACAAGGCTAAGCATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAA
    |   || |  |    |   |  ||||         ||||||  |   || |||| || |  | | || | |||   |||||||||| ||||| |||| ||||||||||||||||||||||||| ||| | ||||||||||||||||||||  ||||||||   || ||||| |||||||||||||| ||||||||||||||
ccattttttaagtttaaggaacatgattttgtat----ttagtatctattgtt-gagactgtaactgtctggaaatttccccattctgatgtgtttattctaaagATACCCAATTGCAGAAAATGCCAAAGAGGAAGACTGACAGAGCACATGTACTAGACAAGAAAAAACATCTCTCAAGGCTAAATGTGAAGGAGGCAGGAAA

upper sequence: GRMZM2G099547_T05 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g19470.2 (Oryza sativa), 3'ss of exon 1
gtgtcactaggaattgctactgtttttttaggaagtactagtataaacaattcgagaatgatttttttgtatattccattctgatatgtttgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTTTAGACAAGGCTAAGCATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAA--------------
       || | |     | | | | ||||| |  || |  |  | ||  |    |  ||    |||        |||||||||| ||||| |||| ||||||||||||||||||||||||| ||| | ||||||||||||||||||||  ||||||||   || ||||| |||||||||||||| ||||||||||||||              
-------taaggaacatgattttgtatttagtatctattgttg-agactgtaactgtctggaaatttc------cccattctgatgtgtttattctaaagatacccaattgcagAAAATGCCAAAGAGGAAGACTGACAGAGCACATGTACTAGACAAGAAAAAACATCTCTCAAGGCTAAATGTGAAGGAGGCAGGAAAGGTCCTGTTGAAAC

upper sequence: GRMZM2G099547_T05 (Zea mays), 3'ss of exon 1
lower sequence: Vv17s0000g01530.t01 (Vitis vinifera), 3'ss of exon 1
gtgtcactaggaattgctactgtttttttaggaagtactagta--taaacaattcgagaatgatttttttgtatattccattctgatatgtttgttctg-aagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTTTAGACAAGGCTAAGCATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAA
   |   |||  ||| ||  |  |      |     |  |||   ||||  ||||   |||| | |      ||    ||| || | || ||| || |  |||||||||||||||||||| |||| ||| | || ||||||||| |  |||| || |||||  | ||||||||| ||||||||||| | || || ||||||||
---tttttagctattactttttgtgcaaacgagttcaacagttgctaaagcattcctcaatggtgtaaacaaattagtcatactaaaatattttttttataagATACCCAATTGCAGAAAGTGCCTAAGAGGAAAACTGACAGATCTTATGTGTTGGACAAAACGAAGCATCTTGCAAGGCTAAATATCAATGAAGCAGGAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211228685|gb|FK986413.1|FK986413
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211224564|gb|FK986388.1|FK986388
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211222495|gb|FK986365.1|FK986365
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|71303364|gb|DR787782.1|DR787782
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211224563|gb|FK986387.1|FK986387
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211224562|gb|FK986386.1|FK986386
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211222506|gb|FK986376.1|FK986376
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211228680|gb|FK986408.1|FK986408
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211224553|gb|FK986377.1|FK986377
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211222498|gb|FK986368.1|FK986368
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211228687|gb|FK986415.1|FK986415
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211224561|gb|FK986385.1|FK986385
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211226629|gb|FK986401.1|FK986401
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211222503|gb|FK986373.1|FK986373
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211222504|gb|FK986374.1|FK986374
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|15199102|gb|BI423657.1|BI423657
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|94477735|gb|EB706693.1|EB706693
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211224565|gb|FK986389.1|FK986389
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211222502|gb|FK986372.1|FK986372
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|101392939|gb|EB818400.1|EB818400
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211222497|gb|FK986367.1|FK986367
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211224554|gb|FK986378.1|FK986378
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|12045537|gb|BF727676.1|BF727676
EST:     CCTTTTTGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211226620|gb|FK986392.1|FK986392
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|9731972|gb|BE510724.1|BE510724
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|149104413|gb|EE289858.2|EE289858
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211226627|gb|FK986399.1|FK986399
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211224567|gb|FK986391.1|FK986391
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211224559|gb|FK986383.1|FK986383
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211226630|gb|FK986402.1|FK986402
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211226625|gb|FK986397.1|FK986397
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211224566|gb|FK986390.1|FK986390
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211228689|gb|FK986417.1|FK986417
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|148980593|gb|EE027217.2|EE027217
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211228682|gb|FK986410.1|FK986410
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATG
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATG
EST: gi|71433975|gb|DR815025.1|DR815025
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211226634|gb|FK986406.1|FK986406
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACANTGTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACA-TGTT
EST: gi|60337078|gb|DN204051.1|DN204051
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211228684|gb|FK986412.1|FK986412
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211226624|gb|FK986396.1|FK986396
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211222501|gb|FK986371.1|FK986371
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGA
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGA
EST: gi|211228690|gb|FK986418.1|FK986418
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|71450211|gb|DR831261.1|DR831261
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211224557|gb|FK986381.1|FK986381
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211228686|gb|FK986414.1|FK986414
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211228679|gb|FK986407.1|FK986407
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211224560|gb|FK986384.1|FK986384
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211226633|gb|FK986405.1|FK986405
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211222496|gb|FK986366.1|FK986366
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211224556|gb|FK986380.1|FK986380
EST:     CCTTTTCNTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211228691|gb|FK986419.1|FK986419
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211228692|gb|FK986420.1|FK986420
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGAC
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGAC
EST: gi|211226628|gb|FK986400.1|FK986400
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211226626|gb|FK986398.1|FK986398
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211228688|gb|FK986416.1|FK986416
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211224555|gb|FK986379.1|FK986379
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|19822251|gb|BQ048275.1|BQ048275
EST:     TCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211228683|gb|FK986411.1|FK986411
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAA
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAA
EST: gi|17929991|gb|BM266951.1|BM266951
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211226631|gb|FK986403.1|FK986403
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211226621|gb|FK986393.1|FK986393
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|71435787|gb|DR816837.1|DR816837
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211228681|gb|FK986409.1|FK986409
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211226623|gb|FK986395.1|FK986395
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|78117103|gb|DV535490.1|DV535490
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211226632|gb|FK986404.1|FK986404
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGA
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGA
EST: gi|78075508|gb|DV503942.1|DV503942
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCAT---C-                         --A--C-----C-GAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211224558|gb|FK986382.1|FK986382
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|211222499|gb|FK986369.1|FK986369
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
EST: gi|50325142|gb|CO520268.1|CO520268
EST:     CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCG                         ATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT
genomic: CCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 249

ACACACACCTACTCGAGCGAGGACGCACTGCCGGAGGGCCCCGAGTCCGACCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTTTAGACAAGGCTAAGCATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAA


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 214

ACACACACCTACTCGAGCGAGGACGCACTGCCGGAGGGCCCCGAGTCCGACCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTTTAGACAAGGCTAAGCATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 201

ACACACACCTACTCGAGCGAGGACGCACTGCCGGAGGGCCCCGAGTCCGACCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTTTAGACAAGGCTAAGCATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 132

ACACACACCTACTCGAGCGAGGACGCACTGCCGGAGGGCCCCGAGTCCGACCTTTTCGTATACTACTGCAAGCACTGCGCCTCACATGTCCTCATCACCGgtcagctcct ... tgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTTTAGACAAGGCTAAGCATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacaattcgagaatgatttttttgtatattccattctgatatgtttgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTTTAGACAAGGCTAAGCATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAA
                                 ttctgat  putative branch site (score: 132)
                                           tttgttct  putative PPT
         agaatgatttttttgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgtcactaggaattgctactgtttttttaggaagtactagtataaacaattcgagaatgatttttttgtatattccattctgatatgtttgttctgaagATACCCAATTGCAGAAAATGCCCAAGCGAAAGACTGACAGAGCACATGTTTTAGACAAGGCTAAGCATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - -gctactg
- - - - - - - - - - - - - - - - - - - - - - aaacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattctg