Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211150565|gb|FL189863.1|FL189863EST: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST:
gi|5510830|gb|AI857214.1|AI857214EST: CGGAGAGCATGAAGGAGCTGCGCGAGATNNNNNNNAAGCACCCATG GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: CGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST:
gi|74238429|gb|DT646343.1|DT646343EST: GAGCCCGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST:
gi|149014739|gb|EE044420.2|EE044420EST: CCGCCAAGCACCCATG GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: CCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST:
gi|86474833|gb|DY241203.1|DY241203EST: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST:
gi|16916553|gb|BM072891.1|BM072891EST: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST:
gi|37379818|gb|CF626673.1|CF626673EST: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST:
gi|91879069|gb|EB409026.1|EB409026EST: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGGCAAGCACCCATG GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGGTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST:
gi|50337681|gb|CO532807.1|CO532807EST: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST:
gi|211091281|gb|FL220529.1|FL220529EST: ATCACCGCCAAGCACCCATG GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: ATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtcccgctagcttttcgccctgtcgtacgtggtggattcgagtgtgtgggcctgctggacgtggacagaccgagatctgagaacgaacgtggcgtggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCATCAAGCTCATCGGCGCCAAGAAGACCATGGAGATCGGCGTCTACACCGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC