Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacaagctgagcgcaatgagtggctgaatctgaccgggatctgagtctctgaccgcgggggaagaatgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG

Basic information

species Zea mays
transcript GRMZM2G099363_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G099363_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os06g06980.2 (Oryza sativa), 3'ss of exon 1
-----------------------gtaaacaagctgagcgcaatgagtggctgaatctgaccgggatctgagtctctgaccgcgggggaagaatgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG
                            |  || |       |  |  || |   ||||||  |  |||| |  |||||  ||| |      |  |||||||||||||||||| ||||||||||||||||| ||||  ||| ||||||||||||| |||||| |||||||||| ||||||||
gtaacccgccgtctccggccatcccctcctcgccggaaaacctccgccgccgtggctgaccttg-cctgactggctgact-cggtgcttcgtt--tccgcagTACATCCTGGAGACGAGCGTGTACCCGCGCGAGCACGAGTGCATGAAGGAGCTCCGCGAGGTCACCGCCAACCACCCATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149101272|gb|EE187384.2|EE187384
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|148972013|gb|EE022838.2|EE022838
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|78123950|gb|DV542334.1|DV542334
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|50336771|gb|CO531897.1|CO531897
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|91051409|gb|EB161827.1|EB161827
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|71443172|gb|DR824222.1|DR824222
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|67031902|gb|CO460651.1|CO460651
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTCTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|91876481|gb|EB406438.1|EB406438
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|120479778|gb|EH210632.1|EH210632
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|211456349|gb|FL164074.1|FL164074
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|91876447|gb|EB406404.1|EB406404
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|211456348|gb|FL164073.1|FL164073
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|71765961|gb|DR963898.1|DR963898
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|67019504|gb|CO448253.1|CO448253
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTCTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|148998166|gb|EE035959.2|EE035959
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|148985087|gb|EE029621.2|EE029621
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|78082021|gb|DV510433.1|DV510433
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|78123859|gb|DV542243.1|DV542243
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|67017580|gb|CO446329.1|CO446329
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTCTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|76915702|gb|DV166083.1|DV166083
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|149015442|gb|EE045300.2|EE045300
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|148999943|gb|EE037004.2|EE037004
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|149070197|gb|EE158600.2|EE158600
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|71761423|gb|DR959360.1|DR959360
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|148995915|gb|EE035157.2|EE035157
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGAAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|211456350|gb|FL164075.1|FL164075
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|71445182|gb|DR826232.1|DR826232
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|149077072|gb|EE165728.2|EE165728
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|86474833|gb|DY241203.1|DY241203
EST:     GCCACAAGAGCCTGCTCAAGAGGGACGACCTGTACCAG                         TACATCCTGGACACGAGGGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: GCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|74238430|gb|DT646344.1|DT646344
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|78091016|gb|DV519390.1|DV519390
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|93012213|gb|EB637733.1|EB637733
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|211456343|gb|FL164068.1|FL164068
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|93012147|gb|EB637667.1|EB637667
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|76012700|gb|DT939870.1|DT939870
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|91874063|gb|EB404020.1|EB404020
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|50337682|gb|CO532808.1|CO532808
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|71438266|gb|DR819316.1|DR819316
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|94479696|gb|EB708654.1|EB708654
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|78121952|gb|DV540336.1|DV540336
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|50334621|gb|CO529747.1|CO529747
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|148935114|gb|EC879154.2|EC879154
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|33466804|gb|CF243853.1|CF243853
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|50337681|gb|CO532807.1|CO532807
EST:     AGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: AGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|89759581|gb|DY688363.1|DY688363
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|149050399|gb|EE155646.2|EE155646
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|78089028|gb|DV517421.1|DV517421
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|211456344|gb|FL164069.1|FL164069
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|211456345|gb|FL164070.1|FL164070
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|149014740|gb|EE044421.2|EE044421
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|50338479|gb|CO533605.1|CO533605
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|50328057|gb|CO523183.1|CO523183
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|86474834|gb|DY241204.1|DY241204
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGACCCGGAGAGCATGAAAGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|211456347|gb|FL164072.1|FL164072
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|6269973|gb|AW157944.1|AW157944
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|19351241|gb|BM895773.1|BM895773
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTCTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: gi|71446731|gb|DR827781.1|DR827781
EST:     ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAG                         TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTGTACCAGgtaaacaagc ... tgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggctgaatctgaccgggatctgagtctctgaccgcgggggaagaatgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG
                         ctctgac  putative branch site (score: 3)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaacaagctgagcgcaatgagtggctgaatctgaccgggatctgagtctctgaccgcgggggaagaatgatccgcagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA