1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gcgagaagggccgtaggatcagggagctcacctccgtcgtccagaagaggttcaacttccctgagaatggcgttgagctttatgccgagaaggtcgtcaaCCGTGGGCTCTGTGCCATCGCGCAGGCCGAGTCCCTCCGTTACAAGCTCCTCGGTGGCCTTGCCGTCCGCAG
species | Zea mays |
transcript | GRMZM2G099352_T04 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCCTGCTCGCCTCCGCCGCCGGAGCGAGCTCCCCATCTTCATCCGTCAA CCGTGGGCTCTGTGCCATCGCGCAGGCCGAGTCCCTCCGTTACAAGCTCCTEST: gi|211149446|gb|FL325047.1|FL325047
genomic: CGCCTGCTCGCCTCCGCCGCCGGAGCGAGCTCCCCATCTTCATCCGTCAAccatggcgac ... aggtcgtcaaCCGTGGGCTCTGTGCCATCGCGCAGGCCGAGTCCCTCCGTTACAAGCTCCT
EST: CGCCTGCTCGCCTCCGCCGCCGGAGCGAGCTCCCCATCTTCATCCGTCAA CCGTGGGCTCTGTGCCATCGCGCAGGCCGAGTCCCTCCGTTACAAGCTCCT
genomic: CGCCTGCTCGCCTCCGCCGCCGGAGCGAGCTCCCCATCTTCATCCGTCAAccatggcgac ... aggtcgtcaaCCGTGGGCTCTGTGCCATCGCGCAGGCCGAGTCCCTCCGTTACAAGCTCCT
agaggttcaacttccctgagaatggcgttgagctttatgccgagaaggtcgtcaaCCGTGGGCTCTGTGCCATCGCGCAGGCCGAGTCCCTCCGTTACAAGCTCCTCGGTGGCCTTGCCGTCCGCAG
tttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgagaagggccgtaggatcagggagctcacctccgtcgtccagaagaggttcaacttccctgagaatggcgttgagctttatgccgagaaggtcgtcaaCCGTGGGCTCTGTGCCATCGCGCAGGCCGAGTCCCTCCGTTACAAGCTCCTCGGTGGCCTTGCCGTCCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - cacctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgccg