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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcgagcgcttcctaaccgcagtgctcccctcccccccgtgcgtcgatggatctgacctcggtgctcggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGGGAGCTGGCGGAGGACGGCTACTCTGGCGTGGAGGTGCGCGTCACGCCGA

Basic information

species Zea mays
transcript GRMZM2G099352_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G099352_T06 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g38000.1 (Oryza sativa), 3'ss of exon 1
gtacgcgagcgcttcctaaccgcagtgctcccctcccccccgtgcgtcgatggatct-gacct--cggtgctcggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGGGAGCTGGCGGAGGACGGCTACTCTGGCGTGGAGGTGCGCGTCACGCCGA
|||||     | | |||   ||||| | | |  | |    ||    |||||    || || ||   |||  | | |  |||||||||| ||||| || || |||||||| ||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||
gtacggtgcagatccct---cgcagggtttcgattcgattcgat--tcgattctcctcgatctgatggtttttgttcatgtagTTCGTGAGCGATGGCGTGTTCTACGCGGAGCTGAACGAGATGCTGACGCGGGAGCTGGCCGAGGACGGCTACTCCGGCGTGGAGGTGCGCGTGACGCCGA

upper sequence: GRMZM2G099352_T06 (Zea mays), 3'ss of exon 1
lower sequence: EDP07493 (Chlamydomonas reinhardtii), 3'ss of exon 1
-----------------gtacgcgagcgcttcctaaccgcagtgctcccctcccccccgtgcgtcgatgg----atctg---acctcggtgctcggttt----tgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGGGAGCTGGCGGAGGACGGCTACTCTGGCGTGGAGGTGCGCGTCACGCCGA
                  || |     |||   | | ||| |    ||   |||   || |    | |||     |||    |      |||||  | |       ||||||||   ||||| || |||||||||||||| || ||| | ||||| || |||||||| ||||| |||||||| || |||||||| ||||| || || |
gtaggccaggcttctgaatatgttgcggctg--tgagcgcgggcggccggccccttgcgaggacaggtggctaagtctacgtattctattgctccatgtgccacacagTTCGTCCAGGACGGCGTGTTCTACGCCGAGCTGAACGAGCTCCTGACCCGCGAGCTGGCCGAGGATGGCTACTCCGGTGTGGAGGTCCGCGTGACCCCCA

upper sequence: GRMZM2G099352_T06 (Zea mays), 3'ss of exon 1
lower sequence: PP1S41_146V6.1 (Physcomitrella patens), 3'ss of exon 1
---------------------------------------gtacgcgagcgcttcctaaccgcagtgctcccctcccccccgtgcgtcgatggatctgacctcggtgctcggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGGGAGCTGGCGGAGGACGGCTACTCTGGCGTGGAGGTGCGCGTCACGCCGA
                                       ||      || ||       | | |   | |         |   |   | || ||      | ||| ||  || ||  |||||||    ||||||||||||| |||||||||||| ||| | || || ||||| || || ||||| |||||||| ||||| || |||||||| || || |
gtgaggctatctcgttttgtggaggttttccaggctcgtgttgatttgctctattctggcacggccttgcttctagaagctcacacagttgcattgtgggttggt-ctttgtctttcagTTCGTAGCTGACGGTGTTTTCTTCGCCGAGCTCAACGAGCTTCTCACCCGGGAACTTGCCGAGGATGGCTACTCCGGCGTTGAAGTGCGCGTGACCCCCA

upper sequence: GRMZM2G099352_T06 (Zea mays), 3'ss of exon 1
lower sequence: PP1S31_178V6.1 (Physcomitrella patens), 3'ss of exon 1
------------------------------------------------gtacgcgagcgcttcctaaccgcagtgctcccct----cccccccgtgcgtcgatggatctgacctcggtgctcggttttgt-----------------agTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGGGAGCTGGCGGAGGACGGCTACTCTGGCGTGGAGGTGCGCGTCACGCCGA
                                                 |     |  | ||  |||  |   |  |  |      | | |  | ||     | ||   || | | |  |||   |||||                 |||| ||    ||||||||||||| |||||||||||||||| | || || || ||||| || || || ||||| ||||| ||||| ||||||||||| || |
gtggaattcttcgcttgtgaacaagtttttgagactttggctgtttttttttttaaatgatttttaattgttttttttgctgaaaactcactagggcacatttcgagtagatcacagcactcatgtttgttttatctcttttctcacagTTTGTAGCAGACGGTGTTTTCTTCGCCGAGCTCAATGAGCTTCTCACCCGCGAGCTCGCCGAAGATGGCTATTCTGGAGTGGAAGTGCGCGTCACTCCCA

upper sequence: GRMZM2G099352_T06 (Zea mays), 3'ss of exon 1
lower sequence: PP1S127_74V6.1 (Physcomitrella patens), 3'ss of exon 1
----------------------------------------------gtacgcgagcgcttcctaac----cgcagtgctcccc--tcccccccgtgcgtcgatggatctgacctcggtg----ctcggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGGGAGCTGGCGGAGGACGGCTACTCTGGCGTGGAGGTGCGCGTCACGCCGA
                                              |   | ||| | ||  ||      ||   || | |||  |||          |  |  | |||| | |  ||     ||||||   | |||| ||    |||||||| || |  || |||||||||||| | || || || ||||| || ||||||||||| || || |||||||||||||||||||| |
gtttgtggttctaatttcaggcacttcgaaatttcgagatacttgaggttgtgagggttttttagtattacgttttgttgcccgatccttttgaaagttttacagctctgccgtgtgtctggtctcggtcgcgcagTTTGTAGCAGACGGTGTGTTTTTTGCTGAGCTCAATGAGCTTCTCACCCGAGAGCTTGCTGAGGACGGCTATTCCGGAGTGGAGGTGCGCGTCACGCCTA

upper sequence: GRMZM2G099352_T06 (Zea mays), 3'ss of exon 1
lower sequence: PP1S136_175V6.1 (Physcomitrella patens), 3'ss of exon 1
--------------------------------------------------------------gtacgcgagcgcttcctaaccgcagtgctcccctcccccccgtgcgtcgatggatctgacctcggtgctcggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGGGAGCTGGCGGAGGACGGCTACTCTGGCGTGGAGGTGCGCGTCACGCCGA
                                                               | | ||||| ||| ||    |  |  || ||||  |  || || ||   |||           | |||||    || |||| ||    ||||| ||||||| ||| |||||||| ||| | || || || ||||| || || || || |||||||||||||||||||| ||||| || |
gtgagagaattctatttggttgggagaggagtttggagttctggtgaaatgtaagtagaatcatgcacgagctcttacttcgagatgcacttcccttactgccttgtgtttgtggtc---------gcgctcg----tgcagTTTGTAGCAGACGGAGTTTTCTTCGCTGAGCTCAACGAGCTTCTCACCCGCGAGCTCGCTGAAGATGGTTACTCTGGCGTGGAGGTGCGTGTCACCCCCA

upper sequence: GRMZM2G099352_T06 (Zea mays), 3'ss of exon 1
lower sequence: EFJ34676 (Selaginella moellendorffii), 3'ss of exon 1
gtacgcgagcgcttcctaaccgcagtgctcccctcccccccgtgcgtcgatggatctgacctcggtgctcggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGGGAGCTGGCGGAGGACGGCTACTCTGGCGTGGAGGTGCGCGTCACGCCGA
                                        |  ||   |  |   |   |   | | |||  | ||  ||||||||  ||| || || ||||||||||||||||||||| | || ||||||||||| |||||||| || ||||| |||||||||||||| ||||| ||||
----------------------------------gtttgtcaagcaatgccgctccctcctctgattctc--tcttccagTTCGTCGCCGATGGAGTGTTCTACGCCGAGCTCAATGAGCTTCTCACGCGGGAGCTAGCGGAGGATGGATACTCGGGCGTGGAGGTGCGTGTCACACCGA

upper sequence: GRMZM2G099352_T06 (Zea mays), 3'ss of exon 1
lower sequence: EFJ34304 (Selaginella moellendorffii), 3'ss of exon 1
gtacgcgagcgcttcctaaccgcagtgctcccctcccccccgtgcgtcgatggatctgacctcggtgctcggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGGGAGCTGGCGGAGGACGGCTACTCTGGCGTGGAGGTGCGCGTCACGCCGA
             ||    | ||| |||  | | | ||  |     ||    ||| |||             | ||  ||||||||  ||| || || ||||||||||||||||| ||| | || ||||||||| | || ||||| || ||||| |||||||||||||| ||||| ||||
------------gtctgttcagcaatgccgctccctccttc-----tcctctgatttgat------------tcttccagTTCGTCGCCGATGGCGTGTTCTACGCCGAGCTCAACGAGCTTCTCACGCGGGAGTTAGCAGAGGATGGATACTCGGGCGTGGAGGTGCGTGTCACACCGA

upper sequence: GRMZM2G099352_T06 (Zea mays), 3'ss of exon 1
lower sequence: EFJ31038 (Selaginella moellendorffii), 3'ss of exon 1
gtacgcgagcgcttcctaaccgcagtgctcccctcccccccgtgcgtcgatggatctgacctcggtgctcggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGGGAGCTGGCGGAGGACGGCTACTCTGGCGTGGAGGTGCGCGTCACGCCGA
          | ||  | |  ||| |||  | ||||||  | |||   |||     |||             | ||  ||||||||  ||| || || ||||||||||||||||| ||| | || ||||||||| | || ||||| || ||||| |||||||||||||| ||||| ||||
----------gtttgttca--gcaatgccgctctccccttc-tgctctgat----ttgat------------tcttccagTTCGTCGCCGATGGCGTGTTCTACGCCGAGCTCAACGAGCTTCTCACGCGGGAGTTAGCAGAGGATGGATACTCGGGCGTGGAGGTGCGTGTCACACCGA

upper sequence: GRMZM2G099352_T06 (Zea mays), 3'ss of exon 1
lower sequence: EFJ31296 (Selaginella moellendorffii), 3'ss of exon 1
gtacgcgagcgcttcctaaccgcagtgctcccctcccccccgtgcgtcgatggatctgacctcggtgctcggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGGGAGCTGGCGGAGGACGGCTACTCTGGCGTGGAGGTGCGCGTCACGCCGA
          | ||  | |  ||| |||  | ||||||  |             ||||| |||         | ||  ||||||||  ||| || || ||||||||||||||||||||| | || ||||||||| | |||||||| || ||||| |||||||||||||| ||||| ||||
----------gtttgttca--gcaatgccgctctccccttctcc----------tctgatctc---------tcttccagTTCGTCGCCGATGGAGTGTTCTACGCCGAGCTCAATGAGCTTCTCACGCGGGAGTTAGCGGAGGATGGATACTCGGGCGTGGAGGTGCGTGTCACACCGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211502558|gb|FL197030.1|FL197030
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211514363|gb|FL197102.1|FL197102
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211516713|gb|FL197110.1|FL197110
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCACCGACGGTGTTTTCTATGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|13562191|gb|BG550411.1|BG550411
EST:     GTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: GTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|78116329|gb|DV534716.1|DV534716
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|31558486|gb|CD527698.1|CD527698
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211372208|gb|FL196989.1|FL196989
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAACGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211507272|gb|FL197056.1|FL197056
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211507275|gb|FL197059.1|FL197059
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|14883604|gb|BI273442.1|BI273442
EST:     CCCATCTT-ATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211514356|gb|FL197095.1|FL197095
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACAGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211374867|gb|FL196999.1|FL196999
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211509643|gb|FL197078.1|FL197078
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211504907|gb|FL197037.1|FL197037
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211512004|gb|FL197084.1|FL197084
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211504908|gb|FL197038.1|FL197038
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|31405891|gb|CD484623.1|CD484623
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211516719|gb|FL197116.1|FL197116
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211509644|gb|FL197079.1|FL197079
EST:     CCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAATGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCG
genomic: CCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAA-GAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCG
EST: gi|29577058|gb|CB617170.1|CB617170
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211507273|gb|FL197057.1|FL197057
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211502562|gb|FL197034.1|FL197034
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGSTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211514368|gb|FL197107.1|FL197107
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|28873265|gb|CB329280.1|CB329280
EST:     CCCATCTTCATCC-NCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|32915966|gb|CF020778.1|CF020778
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211509639|gb|FL197074.1|FL197074
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211502557|gb|FL197029.1|FL197029
EST:     CCCATCTTCATCCGTGGRCCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGASGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211512001|gb|FL197081.1|FL197081
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211512003|gb|FL197083.1|FL197083
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211372202|gb|FL196983.1|FL196983
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211372207|gb|FL196988.1|FL196988
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211504916|gb|FL197046.1|FL197046
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211509637|gb|FL197072.1|FL197072
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCWGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCNG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211374862|gb|FL196994.1|FL196994
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211509638|gb|FL197073.1|FL197073
EST:     CCATCTTCATCCGTCAACCATGGCGACCCRAGATCAGCAAGRAGAASAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCATCTTCATCCGTCAACCATGGCGACCC-AGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211502559|gb|FL197031.1|FL197031
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211504909|gb|FL197039.1|FL197039
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211377524|gb|FL197014.1|FL197014
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211504905|gb|FL197035.1|FL197035
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211514366|gb|FL197105.1|FL197105
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211514369|gb|FL197108.1|FL197108
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|26457184|gb|CA828767.1|CA828767
EST:     CCATCTTCATCCG-CAACCATGGCGGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAACGAGATGCTGACGCGG
genomic: CCATCTTCATCCGTCAACCATGGC-GACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211502550|gb|FL197022.1|FL197022
EST:     CCCATCTTCATCSGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211509635|gb|FL197070.1|FL197070
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|15499355|gb|BI595868.1|BI595868
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|28873372|gb|CB329371.1|CB329371
EST:     ATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAA-AA-AAG                         -TCGTCAGCGACGG-GTTTTCTACGCCGAGCTCAATGA-ATGCTGACGCGG
genomic: ATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211374859|gb|FL196991.1|FL196991
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211377537|gb|FL197013.1|FL197013
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211377535|gb|FL197011.1|FL197011
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|31612231|gb|CD568853.1|CD568853
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211372196|gb|FL196977.1|FL196977
EST:     CCATCGTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCATC-TTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|19351839|gb|BM896371.1|BM896371
EST:     CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 542

TCAAAACCCTAGAGCTCTCGCCTGCTCGCCTCCGCCGCCGGAGCGAGCTCCCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGGGAGCTGGCGGAGGACGGCTACTCTGGCGTGGAGGTGCGCGTCACGCCGA


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 208

TCAAAACCCTAGAGCTCTCGCCTGCTCGCCTCCGCCGCCGGAGCGAGCTCCCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGGGAGCTGGCGGAGGACGGCTACTCTGGCGTGGAGGTGCGCGTCACGCCGA


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 167

TCAAAACCCTAGAGCTCTCGCCTGCTCGCCTCCGCCGCCGGAGCGAGCTCCCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGGGAGCTGGCGGAGGACGGCTACTCTGGCGTGGAGGTGCGCGTCACGCCGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 401

TCAAAACCCTAGAGCTCTCGCCTGCTCGCCTCCGCCGCCGGAGCGAGCTCCCCATCTTCATCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGGGAGCTGGCGGAGGACGGCTACTCTGGCGTGGAGGTGCGCGTCACGCCGA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctcccctcccccccgtgcgtcgatggatctgacctcggtgctcggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGGGAGCTGGCGGAGGACGGCTACTCTGGCGTGGAGGTGCGCGTCACGCCGA
                            atctgac  putative branch site (score: 401)
                                               ttttgta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgcgagcgcttcctaaccgcagtgctcccctcccccccgtgcgtcgatggatctgacctcggtgctcggttttgtagTTCGTCAGCGACGGTGTTTTCTACGCCGAGCTCAATGAGATGCTGACGCGGGAGCTGGCGGAGGACGGCTACTCTGGCGTGGAGGTGCGCGTCACGCCGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG