1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...actcaaccatattgttgatgcaatttggtgtagttgctttctgtcactttattcattaagttcttgatgaaacagctgatagtatttttcttgtggacagGAGATATGCCTCGCTATGATGATCGCTATGGAGGCACGCGCTTGTATGTTGGCAGATTGGCCCCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGG
species | Zea mays |
transcript | GRMZM2G099317_T04 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAG GAGATATGCCTCGCTATGATGATCGCTATGGAGGCACGCGCTTGTATGTTGEST: gi|14245050|gb|BG873632.1|BG873632
genomic: CCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGgtacccttct ... ttgtggacagGAGATATGCCTCGCTATGATGATCGCTATGGAGGCACGCGCTTGTATGTTG
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAG GAGATATGCCTCGCTATGATGATCGCTATGGAGGCACGCGCTTGTATGTTGEST: gi|91870729|gb|EB401054.1|EB401054
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGgtacccttct ... ttgtggacagGAGATATGCCTCGCTATGATGATCGCTATGGAGGCACGCGCTTGTATGTTG
EST: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAG GAGATATGCCTCGCTATGATGATCGCTATGGAGGCACGCGCTTGTATGTTG
genomic: TCCCTCGTGCCCCGCCGGCTCTCCAGCGCGCCGTCTCTGCCCAGATCCAGgtacccttct ... ttgtggacagGAGATATGCCTCGCTATGATGATCGCTATGGAGGCACGCGCTTGTATGTTG
actttattcattaagttcttgatgaaacagctgatagtatttttcttgtggacagGAGATATGCCTCGCTATGATGATCGCTATGGAGGCACGCGCTTGTATGTTGGCAGATTGGCCCCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGG
agctgat putative branch site (score: 4)
tatttttctt putative PPT
atagtatttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actcaaccatattgttgatgcaatttggtgtagttgctttctgtcactttattcattaagttcttgatgaaacagctgatagtatttttcttgtggacagGAGATATGCCTCGCTATGATGATCGCTATGGAGGCACGCGCTTGTATGTTGGCAGATTGGCCCCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT