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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgaaacatgaactgttttgcaatgcacaaaaaaaaacgtgcagttagctgaaagcctgaaggcattaaactaaaatgtttcgtttccctgtgttttccagGTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCATGGCTGTAGCTAGCTAGGCCCTGCTTTCCTGTTTGTAAAGATACATCAT

Basic information

species Zea mays
transcript GRMZM2G099255_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211482404|gb|FK951269.1|FK951269
EST:     GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGG                         GTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
genomic: GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGGgtaagtgact ... tgttttccagGTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
EST: gi|211482403|gb|FK951268.1|FK951268
EST:     GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGG                         GTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
genomic: GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGGgtaagtgact ... tgttttccagGTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
EST: gi|211482402|gb|FK951267.1|FK951267
EST:     GTGGAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGG                         GTTTTTGGGTTTTGATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
genomic: GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGGgtaagtgact ... tgttttccagGTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
EST: gi|149106922|gb|EE188823.2|EE188823
EST:     GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGG                         GTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
genomic: GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGGgtaagtgact ... tgttttccagGTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
EST: gi|31355133|gb|CD439490.1|CD439490
EST:     GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGG                         GTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
genomic: GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGGgtaagtgact ... tgttttccagGTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
EST: gi|211482406|gb|FK951271.1|FK951271
EST:     GTGGAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGG                         GTTTTTGGGTTTTGATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
genomic: GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGGgtaagtgact ... tgttttccagGTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
EST: gi|71442863|gb|DR823913.1|DR823913
EST:     GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGG                         GTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
genomic: GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGGgtaagtgact ... tgttttccagGTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
EST: gi|71767367|gb|DR965304.1|DR965304
EST:     GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGG                         GTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
genomic: GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGGgtaagtgact ... tgttttccagGTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
EST: gi|91050289|gb|EB160707.1|EB160707
EST:     GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGG                         GTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
genomic: GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGGgtaagtgact ... tgttttccagGTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
EST: gi|31353293|gb|CD437650.1|CD437650
EST:     GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGG                         GTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
genomic: GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGGgtaagtgact ... tgttttccagGTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
EST: gi|6021044|gb|AW065972.1|AW065972
EST:     GTGGAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGG                         GTTTTTGGGTTTTGATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
genomic: GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGGgtaagtgact ... tgttttccagGTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
EST: gi|50337695|gb|CO532821.1|CO532821
EST:     GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGG                         GTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
genomic: GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGGgtaagtgact ... tgttttccagGTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
EST: gi|78093094|gb|DV521468.1|DV521468
EST:     GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGG                         GTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
genomic: GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGGgtaagtgact ... tgttttccagGTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
EST: gi|211485274|gb|FK951274.1|FK951274
EST:     GTGGAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGG                         GTTTTTGGGTTTTGATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
genomic: GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGGgtaagtgact ... tgttttccagGTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
EST: gi|101388831|gb|EB816397.1|EB816397
EST:     GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGG                         GTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
genomic: GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGGgtaagtgact ... tgttttccagGTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
EST: gi|101399749|gb|EB821721.1|EB821721
EST:     GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGG                         GTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
genomic: GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGGgtaagtgact ... tgttttccagGTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
EST: gi|101398464|gb|EB821105.1|EB821105
EST:     GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGG                         GTTTTTGGGTTTTCATCAGTTCTATCAGAAGAGTGGCTTATGGATGATTGC
genomic: GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGGgtaagtgact ... tgttttccagGTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTG-CTTATGGATGATTGC
EST: gi|78105513|gb|DV523931.1|DV523931
EST:     GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGG                         GTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
genomic: GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGGgtaagtgact ... tgttttccagGTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
EST: gi|78077574|gb|DV506008.1|DV506008
EST:     GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGG                         GTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
genomic: GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGGgtaagtgact ... tgttttccagGTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
EST: gi|78090002|gb|DV518376.1|DV518376
EST:     GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGG                         GTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
genomic: GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGGgtaagtgact ... tgttttccagGTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
EST: gi|149082890|gb|EE172121.2|EE172121
EST:     GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGG                         GTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
genomic: GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGGgtaagtgact ... tgttttccagGTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
EST: gi|71442673|gb|DR823723.1|DR823723
EST:     GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGG                         GTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
genomic: GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGGgtaagtgact ... tgttttccagGTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
EST: gi|148961001|gb|EE011701.2|EE011701
EST:     GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGG                         GTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
genomic: GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGGgtaagtgact ... tgttttccagGTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
EST: gi|76018437|gb|DT945607.1|DT945607
EST:     GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGG                         GTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA
genomic: GTATAGCTCCATCTATCCTGACTGATACGGATCGACCTCTCCTCTCGTGGgtaagtgact ... tgttttccagGTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctgaaagcctgaaggcattaaactaaaatgtttcgtttccctgtgttttccagGTTTTTGGGTTTTCATCAGTTCTATCAGAGGAGTGCTTATGGATGATTGCATGGCTGTAGCTAGCTAGGCCCTGCTTTCCTGTTTGTAAAGATACATCAT
                      aactaaa  putative branch site (score: 2)
                                tttcgtttccctgtgt  putative PPT
                  attaaactaaaatgtt  TA-rich tract