Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71298627|gb|DR785288.1|DR785288EST: GGAGCTTATTGAACCAACCATCCGTGAGTTGGATGCCAAAATGAGAGAAG CTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTA
genomic: GGAGCTTATTGAACCAACCATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtatgcacag ... cctcatgcagCTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTA
EST:
gi|28986788|gb|CB351310.1|CB351310EST: GAGCTTATTGAACCAACCCATCCGTGAGTTGGATGCCAAAATGAGAGAAG CTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTA
genomic: GAGCTTATTGAACCAA-CCATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtatgcacag ... cctcatgcagCTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTA
EST:
gi|71317907|gb|DR795714.1|DR795714EST: GGAGCTTATTGAACCACCCATCCGTGAGTTGGATGCCAAAATGAGAGAAG CTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTA
genomic: GGAGCTTATTGAACCAACCATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtatgcacag ... cctcatgcagCTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTA
EST:
gi|28983213|gb|BQ538564.2|BQ538564EST: ATGCCAAAATGAGAGAAG CTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTA
genomic: ATGCCAAAATGAGAGAAGgtatgcacag ... cctcatgcagCTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTA
EST:
gi|78090990|gb|DV519364.1|DV519364EST: GGAGCTTATTGAACCAACCATCCGTGAGTTGGATGCCAAAATGAGAGAAG CTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTA
genomic: GGAGCTTATTGAACCAACCATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtatgcacag ... cctcatgcagCTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTA
EST:
gi|76281371|gb|DV020939.1|DV020939EST: GGAGCTTATTGAACCAACCATCCGTGAGTTGGATGCCAAAATGAGAGAAG CTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTA
genomic: GGAGCTTATTGAACCAACCATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtatgcacag ... cctcatgcagCTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTA
EST:
gi|71298624|gb|DR785287.1|DR785287EST: GGAGCTTATTGAACCAACCATCCGTGAGTTGGATGCCAAAATGAGAGAAG CTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGTTCTGGCCTA
genomic: GGAGCTTATTGAACCAACCATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtatgcacag ... cctcatgcagCTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTA
EST:
gi|14883571|gb|BI273423.1|BI273423EST: GGAGCTTATTGAACCAACCATCCGTGAGTTGGATGCCAAAATGAGAGAAG CTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCTCTCTGGCCTA
genomic: GGAGCTTATTGAACCAACCATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtatgcacag ... cctcatgcagCTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTA
EST:
gi|71417128|gb|DR803934.1|DR803934EST: GGAGCTTATTGAACCAACCATCCGTGAGTTGGATGCCAAAATGAGAGAAG CTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTA
genomic: GGAGCTTATTGAACCAACCATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtatgcacag ... cctcatgcagCTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTA
EST:
gi|60344260|gb|DN211233.1|DN211233EST: GAACCAACCATCCGTGAGTTGGATGCCAAAATGAGAGAAG CTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTA
genomic: GAACCAACCATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtatgcacag ... cctcatgcagCTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTA
EST:
gi|60357216|gb|DN224189.1|DN224189EST: GGAGCTTATTGAACCAACCATCCGTGAGTTGGATGCCAAAATGAGAGAAG CTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTA
genomic: GGAGCTTATTGAACCAACCATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtatgcacag ... cctcatgcagCTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTA
EST:
gi|60395582|gb|DN228452.1|DN228452EST: GGAGCTTATTGAACCAACCATCCGTGAGTTGGATGCCAAAATGAGAGAAG CTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTA
genomic: GGAGCTTATTGAACCAACCATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtatgcacag ... cctcatgcagCTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTA
EST:
gi|211224314|gb|FK974031.1|FK974031EST: GGAGCTTATTGAACCAACCATCCGTGAGTTGGATGCCAAAATGAGAGAAG CTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCTCTCTGGCCTA
genomic: GGAGCTTATTGAACCAACCATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtatgcacag ... cctcatgcagCTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTA
EST:
gi|91872825|gb|EB402782.1|EB402782EST: GGAGCTTATTGAACCACCCATCCGTGAGTTGGATGCCAAAATGAGAGAAG CTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTA
genomic: GGAGCTTATTGAACCAACCATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtatgcacag ... cctcatgcagCTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTA
EST:
gi|4730779|gb|AI649945.1|AI649945EST: AGTTGGATGCCAAAATGAGAGAAG CTGNAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTA
genomic: AGTTGGATGCCAAAATGAGAGAAGgtatgcacag ... cctcatgcagCTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTA
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
49 (upstream exon),
42 (downstream exon)
Score:
566GACAGCATGCCTAAGATAAAGACAAGTCGTGTCAAGTATCCTGAAGGATGGGAGCTTATTGAACCAACCATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtatgcacag ... cctcatgcagCTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTATTTTCCGTATTTCTCATCAAAGGAGCCGCTACATATATGATCTTTACTA
Block sizes:
49 (upstream exon),
48 (downstream exon)
Score:
229GACAGCATGCCTAAGATAAAGACAAGTCGTGTCAAGTATCCTGAAGGATGGGAGCTTATTGAACCAACCATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtatgcacag ... cctcatgcagCTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTATTTTCCGTATTTCTCATCAAAGGAGCCGCTACATATATGATCTTTACTA
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
327GACAGCATGCCTAAGATAAAGACAAGTCGTGTCAAGTATCCTGAAGGATGGGAGCTTATTGAACCAACCATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtatgcacag ... cctcatgcagCTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTATTTTCCGTATTTCTCATCAAAGGAGCCGCTACATATATGATCTTTACTA
Block sizes:
49 (upstream exon),
46 (downstream exon)
Score:
308GACAGCATGCCTAAGATAAAGACAAGTCGTGTCAAGTATCCTGAAGGATGGGAGCTTATTGAACCAACCATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtatgcacag ... cctcatgcagCTGAAAATGATCCACATGATGGAAAGAGAAAGTGTGAAGCGCTCTGGCCTATTTTCCGTATTTCTCATCAAAGGAGCCGCTACATATATGATCTTTACTA