1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgtgtgctggaacggccggtttatctgcagctgctagtggctatggctttgagcactgacatactgacttttggtccgtgcccgcgcgcccgcgccgcagGTACCGCATGCCGGAGAACTCCATCCCCAAGGAGGCGGCGTACCAGATCATCAACGACGAGCTCATGCTCGACGGGAACCCGCGCCTCAACCTGGCGTCC
species | Zea mays |
transcript | GRMZM2G098875_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCGTGCACTCCACGTTCGCGTCGCGCTACGTCCGCTCGTCTCTCCCAAG GTACCGCATGCCGGAGAACTCCATCCCCAAGGAGGCGGCGTACCAGATCATEST: gi|149072205|gb|EE160451.2|EE160451
genomic: TCCGTGCACTCCACGTTCGCGTCGCGCTACGTCCGCTCGTCTCTCCCAAGgtacgcaccc ... cgcgccgcagGTACCGCATGCCGGAGAACTCCATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: TCCGTGCACTCCACGTTCGCGTCGCGCTACGTCCGCTCGTCTCTCCCAAG GTACCGCATGCCGGAGAACTCCATCCCCAAGGAGGCGGCGTACCAGATCATEST: gi|91049287|gb|EB159705.1|EB159705
genomic: TCCGTGCACTCCACGTTCGCGTCGCGCTACGTCCGCTCGTCTCTCCCAAGgtacgcaccc ... cgcgccgcagGTACCGCATGCCGGAGAACTCCATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: TCCGTGCACTCCACGTTCGCGTCGCGCTACGTCCGCTCGTCTCTCCCAAG GTACCGCATGCCGGAGAACTCCATCCCCAAGGAGGCGGCGTACCAGATCATEST: gi|149043330|gb|EE047394.2|EE047394
genomic: TCCGTGCACTCCACGTTCGCGTCGCGCTACGTCCGCTCGTCTCTCCCAAGgtacgcaccc ... cgcgccgcagGTACCGCATGCCGGAGAACTCCATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: TCCGTGCACTCCACGTTCGCGTCGCGCTACGTCCGCTCGTCTCTCCCAAG GTACCGCATGCCGGAGAACTCCATCCCCAAGGAGGCGGCGTACCAGATCATEST: gi|50326003|gb|CO521129.1|CO521129
genomic: TCCGTGCACTCCACGTTCGCGTCGCGCTACGTCCGCTCGTCTCTCCCAAGgtacgcaccc ... cgcgccgcagGTACCGCATGCCGGAGAACTCCATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: TCCGTGCACTCCACGTTCGCGTCGCGCTACGTCCGCTCGTCTCTCCCAAG GTACCGCATGCCGGAGAACTCCATCCCCAAGGAGGCGGCGTACCAGATCATEST: gi|211107427|gb|FL161083.1|FL161083
genomic: TCCGTGCACTCCACGTTCGCGTCGCGCTACGTCCGCTCGTCTCTCCCAAGgtacgcaccc ... cgcgccgcagGTACCGCATGCCGGAGAACTCCATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: TCCGTGCACTCCACGTTCGCGTCGCGCTACGTCCGCTCGTCTCTCCCAAG GTACCGCATGCCGGAGAACTCCATCCCCAAGGAGGCGGCGTACCAGATCATEST: gi|78085176|gb|DV513569.1|DV513569
genomic: TCCGTGCACTCCACGTTCGCGTCGCGCTACGTCCGCTCGTCTCTCCCAAGgtacgcaccc ... cgcgccgcagGTACCGCATGCCGGAGAACTCCATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: TCCGTGCACTCCACGTTCGCGTCGCGCTACGTCCGCTCGTCTCTCCCAAG GTACCGCATGCCGGAGAACTCCATCCCCAAGGAGGCGGCGTACCAGATCATEST: gi|149075559|gb|EE164095.2|EE164095
genomic: TCCGTGCACTCCACGTTCGCGTCGCGCTACGTCCGCTCGTCTCTCCCAAGgtacgcaccc ... cgcgccgcagGTACCGCATGCCGGAGAACTCCATCCCCAAGGAGGCGGCGTACCAGATCAT
EST: TCCGTGCACTCCACGTTCGCGTCGCGCTACGTCCGCTCGTCTCTCCCAAG GTACCGCATGCCGGAGAACTCCATCCCCAAGGAGGCGGCGTACCAGATCAT
genomic: TCCGTGCACTCCACGTTCGCGTCGCGCTACGTCCGCTCGTCTCTCCCAAGgtacgcaccc ... cgcgccgcagGTACCGCATGCCGGAGAACTCCATCCCCAAGGAGGCGGCGTACCAGATCAT
gctttgagcactgacatactgacttttggtccgtgcccgcgcgcccgcgccgcagGTACCGCATGCCGGAGAACTCCATCCCCAAGGAGGCGGCGTACCAGATCATCAACGACGAGCTCATGCTCGACGGGAACCCGCGCCTCAACCTGGCGTCC
tactgac putative branch site (score: 1)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgtgctggaacggccggtttatctgcagctgctagtggctatggctttgagcactgacatactgacttttggtccgtgcccgcgcgcccgcgccgcagGTACCGCATGCCGGAGAACTCCATCCCCAAGGAGGCGGCGTACCAGATCATCAACGACGAGCTCATGCTCGACGGGAACCCGCGCCTCAACCTGGCGTCC
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